View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14965_high_31 (Length: 222)

Name: NF14965_high_31
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14965_high_31
NF14965_high_31
[»] chr3 (15 HSPs)
chr3 (20-217)||(25882967-25883164)
chr3 (97-217)||(1475334-1475454)
chr3 (96-205)||(11521080-11521189)
chr3 (97-217)||(12573231-12573351)
chr3 (97-217)||(13549695-13549815)
chr3 (96-214)||(12409399-12409516)
chr3 (111-205)||(33914628-33914721)
chr3 (122-205)||(21017844-21017926)
chr3 (88-199)||(25919536-25919647)
chr3 (122-193)||(19219289-19219359)
chr3 (111-205)||(21829198-21829291)
chr3 (96-194)||(8402627-8402725)
chr3 (99-160)||(25188701-25188762)
chr3 (121-214)||(10341762-10341853)
chr3 (133-214)||(13911242-13911323)
[»] chr2 (14 HSPs)
chr2 (96-214)||(35707743-35707861)
chr2 (96-217)||(21505193-21505314)
chr2 (87-201)||(25473968-25474082)
chr2 (100-214)||(19949611-19949725)
chr2 (135-214)||(30998750-30998829)
chr2 (97-205)||(1733042-1733149)
chr2 (111-194)||(32619598-32619680)
chr2 (88-190)||(16593833-16593942)
chr2 (123-214)||(28278480-28278570)
chr2 (155-217)||(35031701-35031763)
chr2 (158-194)||(15829136-15829172)
chr2 (169-205)||(17152166-17152202)
chr2 (134-194)||(21844706-21844766)
chr2 (133-205)||(24047359-24047431)
[»] chr7 (16 HSPs)
chr7 (86-217)||(315115-315246)
chr7 (97-217)||(22067860-22067980)
chr7 (96-217)||(29544459-29544580)
chr7 (100-216)||(7815267-7815383)
chr7 (88-217)||(23124833-23124961)
chr7 (96-202)||(20446179-20446285)
chr7 (96-217)||(21471737-21471858)
chr7 (144-217)||(1255267-1255340)
chr7 (86-151)||(4092602-4092667)
chr7 (97-217)||(9066073-9066193)
chr7 (96-205)||(7142038-7142147)
chr7 (89-194)||(18496498-18496603)
chr7 (111-217)||(21545853-21545957)
chr7 (146-214)||(20470867-20470935)
chr7 (126-205)||(2632502-2632581)
chr7 (133-205)||(9385465-9385537)
[»] chr4 (17 HSPs)
chr4 (96-215)||(9783039-9783158)
chr4 (86-214)||(25315288-25315416)
chr4 (97-203)||(1676363-1676469)
chr4 (97-203)||(1682891-1682997)
chr4 (97-217)||(27302719-27302839)
chr4 (117-217)||(5906774-5906873)
chr4 (87-215)||(4953613-4953741)
chr4 (99-217)||(18897934-18898052)
chr4 (96-205)||(12111398-12111505)
chr4 (122-194)||(34864368-34864439)
chr4 (96-215)||(15192143-15192262)
chr4 (111-194)||(25050142-25050224)
chr4 (88-188)||(1696652-1696750)
chr4 (133-205)||(46647173-46647245)
chr4 (111-194)||(31859957-31860039)
chr4 (90-217)||(10320273-10320400)
chr4 (169-217)||(47024810-47024858)
[»] chr1 (16 HSPs)
chr1 (96-214)||(8247714-8247832)
chr1 (96-217)||(12423968-12424089)
chr1 (97-219)||(21451868-21451989)
chr1 (88-216)||(11770049-11770177)
chr1 (111-217)||(26657432-26657537)
chr1 (96-217)||(30675423-30675545)
chr1 (97-205)||(23519821-23519930)
chr1 (96-205)||(30781700-30781809)
chr1 (111-205)||(12810278-12810371)
chr1 (131-205)||(24903361-24903435)
chr1 (133-217)||(50047158-50047242)
chr1 (111-205)||(23223367-23223460)
chr1 (122-217)||(25266399-25266492)
chr1 (123-193)||(25730649-25730718)
chr1 (133-203)||(18301071-18301143)
chr1 (153-202)||(25494548-25494597)
[»] chr8 (16 HSPs)
chr8 (96-217)||(16054234-16054355)
chr8 (99-191)||(13082017-13082109)
chr8 (111-217)||(12956445-12956550)
chr8 (117-205)||(24120193-24120280)
chr8 (96-217)||(29047373-29047491)
chr8 (88-205)||(14977173-14977290)
chr8 (96-217)||(28901394-28901515)
chr8 (96-190)||(16052358-16052452)
chr8 (132-217)||(5570195-5570280)
chr8 (96-217)||(22894584-22894709)
chr8 (100-217)||(26882352-26882469)
chr8 (96-188)||(11310287-11310379)
chr8 (103-205)||(6358645-6358747)
chr8 (111-205)||(32239243-32239336)
chr8 (86-196)||(31436409-31436519)
chr8 (169-205)||(10867001-10867037)
[»] chr5 (19 HSPs)
chr5 (96-214)||(12340071-12340187)
chr5 (95-215)||(17382091-17382211)
chr5 (83-217)||(15205572-15205704)
chr5 (110-217)||(16634000-16634107)
chr5 (111-214)||(25594749-25594851)
chr5 (96-217)||(24841693-24841814)
chr5 (137-205)||(24517335-24517403)
chr5 (96-214)||(17027467-17027585)
chr5 (117-205)||(18222455-18222542)
chr5 (110-194)||(30072133-30072216)
chr5 (87-166)||(22229740-22229819)
chr5 (99-180)||(25075328-25075408)
chr5 (99-180)||(25133297-25133377)
chr5 (133-214)||(26330125-26330206)
chr5 (122-191)||(11274411-11274479)
chr5 (117-205)||(16622733-16622819)
chr5 (133-194)||(23157865-23157926)
chr5 (105-165)||(22754898-22754957)
chr5 (100-203)||(22967910-22968013)
[»] chr6 (9 HSPs)
chr6 (100-217)||(13759505-13759622)
chr6 (99-208)||(15998454-15998563)
chr6 (99-215)||(15574868-15574983)
chr6 (96-205)||(30355266-30355375)
chr6 (136-217)||(17860502-17860583)
chr6 (89-179)||(15576254-15576344)
chr6 (133-194)||(14924494-14924555)
chr6 (144-217)||(16527878-16527951)
chr6 (133-205)||(16387314-16387386)
[»] scaffold0002 (1 HSPs)
scaffold0002 (87-205)||(446936-447054)
[»] scaffold0386 (2 HSPs)
scaffold0386 (88-219)||(8761-8892)
scaffold0386 (122-208)||(13134-13219)
[»] scaffold0171 (2 HSPs)
scaffold0171 (97-215)||(6137-6255)
scaffold0171 (96-161)||(21337-21402)
[»] scaffold0188 (1 HSPs)
scaffold0188 (97-161)||(27064-27128)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 25882967 - 25883164
Alignment:
Q  20 gataactcaggaaagcttagtgcgcttggttggtcttaggaaaatgcaagatgagtctataagatcattgatgattgagcatcatatgacattttgacta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |||| |||    
T  25882967 gataactcaggaaagcttagtgcgcttggttggtcttaggaaaatgcaagatgagtctataagatcattgatgacagagcatcatatgatactttggcta 25883066  T
Q  120 tatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  ||||||||| ||||| |||| || ||||||||    
T  25883067 tatttctagtactttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttttgaggaacatattatattgttttcactcga 25883164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 1475454 - 1475334
Alignment:
Q  97 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 196  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||   |||||||||||||| |||| |||| ||||||||||||||||||    
T  1475454 agcatcatatgacattttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgaggaata 1475355  T
Q  197 tattgtattcttctcactcga 217  Q
    ||||||||| || ||||||||    
T  1475354 tattgtattattttcactcga 1475334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 11521080 - 11521189
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||||||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||     
T  11521080 gagcatcatattacattttggctataattttaatactttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaac 11521179  T
Q  196 atattgtatt 205  Q
    ||||||||||    
T  11521180 atattgtatt 11521189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 12573231 - 12573351
Alignment:
Q  97 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 196  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||  | ||||||||||||||||||||     
T  12573231 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaatg 12573330  T
Q  197 tattgtattcttctcactcga 217  Q
      ||||||| || ||||||||    
T  12573331 ctttgtattgttttcactcga 12573351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 13549695 - 13549815
Alignment:
Q  97 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 196  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||  | ||||||||||||||||||||     
T  13549695 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaatg 13549794  T
Q  197 tattgtattcttctcactcga 217  Q
      ||||||| || ||||||||    
T  13549795 ctttgtattgttttcactcga 13549815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 12409399 - 12409516
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||  || |||  | |  ||||||||||||||||| |||     
T  12409399 gagcatcacatgacattttgactatatttttagtac-ttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaac 12409497  T
Q  196 atattgtattcttctcact 214  Q
    |||||||||| || |||||    
T  12409498 atattgtattattttcact 12409516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 33914721 - 33914628
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| ||||| |||||||||||||| |||||||||| |||| ||||||||||||||| | || ||||||||| ||||||||||| ||||||||||    
T  33914721 tttttactatgtttttagtactttt-ctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtatt 33914628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 21017844 - 21017926
Alignment:
Q  122 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||||  ||||||||| ||||| ||||    
T  21017844 tttttagta-tttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatatt 21017926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 25919647 - 25919536
Alignment:
Q  88 tgatgattgagcatcatatgacattt-tgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    ||||||| ||||||||||||| |||| ||  ||| |||||||||| ||| ||||| ||||||||| ||||||||||||||| |||  | |||||||||||    
T  25919647 tgatgatggagcatcatatgatatttctggttatgtttttagtacattt-ctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggt 25919549  T
Q  187 ttgaggaatatat 199  Q
    |||||||| ||||    
T  25919548 ttgaggaacatat 25919536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 19219359 - 19219289
Alignment:
Q  122 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 193  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||| |  | ||||||||||||||||||||    
T  19219359 tttttagta-tttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggtttgagga 19219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 21829291 - 21829198
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||||||||||||||| |  ||||  ||||||||||||| ||||||||| |  | | |||| ||||||||||||||||||||| || |||||||    
T  21829291 ttttgactatatttttatttatttta-tttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattttgtatt 21829198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 8402725 - 8402627
Alignment:
Q  96 gagcatcatatgacatttt-gactatattttta-gtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 193  Q
    ||||||||||||| ||||| |||||| |||||| |||  ||| ||||||||||||||  ||||||||||  | | |||| ||||||||||||||||||||    
T  8402725 gagcatcatatgatattttagactatgtttttatgta--tttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgagga 8402628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 25188701 - 25188762
Alignment:
Q  99 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataaga 160  Q
    |||||||||| |||| | ||||||||||| |  |||||||||||||||||||| ||||||||    
T  25188701 catcatatgatatttaggctatatttttacttatttttctttgcatttgaagacaaataaga 25188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 10341762 - 10341853
Alignment:
Q  121 atttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcact 214  Q
    ||||||||||||||| || ||||||||||   |||||||||| || | |||| |||||||||||| |||||||| | |||||||| || |||||    
T  10341762 atttttagtactttt-ctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaaattgtattgttttcact 10341853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 13911242 - 13911323
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcact 214  Q
    ||||||||| ||||||||| || ||||  |||||  |||  ||||||||||||||||||||| |||| ||||| || |||||    
T  13911242 ttttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaacatatggtattgttttcact 13911323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 35707743 - 35707861
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||     
T  35707743 gagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 35707842  T
Q  196 atattgtattcttctcact 214  Q
    || ||||||| || |||||    
T  35707843 atgttgtattgttttcact 35707861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 21505314 - 21505193
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||| ||||| | |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||     
T  21505314 gagcatcatatgatatttttggctatgtttttagta-tttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggag 21505216  T
Q  195 tatattgtattcttctcactcga 217  Q
     |||||||||| || ||||||||    
T  21505215 catattgtattgttttcactcga 21505193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 25473968 - 25474082
Alignment:
Q  87 ttgatgattgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    |||||||  |||||||||||||||||||| |||| |||||||||| |||| ||| |||||||||| ||||||||||||||| |||| |||||||||| ||    
T  25473968 ttgatgacagagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgt 25474067  T
Q  187 ttgaggaatatattg 201  Q
    |||||||| ||||||    
T  25474068 ttgaggaacatattg 25474082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 19949725 - 19949611
Alignment:
Q  100 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 199  Q
    ||||||||| |||||  |||| |||||||||||||||||||| ||||||||| |||||| |||||||   ||| |||||| ||| |||||||||| ||||    
T  19949725 atcatatgatattttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatat 19949626  T
Q  200 tgtattcttctcact 214  Q
    |||||| || |||||    
T  19949625 tgtattattttcact 19949611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 30998750 - 30998829
Alignment:
Q  135 ttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcact 214  Q
    |||||||| |||||||| ||||||||||||||| |||  ||||||||||||||||||||| |||||||||| || |||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcact 30998829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 1733042 - 1733149
Alignment:
Q  97 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 196  Q
    ||||||||||||||||||   ||| ||||||||||||||| ||| |||||||||| |||| |||||||||| |||| |||||||||||  ||||| || |    
T  1733042 agcatcatatgacattttagttatgtttttagtacttttttttt-catttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaaca 1733140  T
Q  197 tattgtatt 205  Q
     ||||||||    
T  1733141 aattgtatt 1733149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 32619598 - 32619680
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||  ||||||  |||| |||||| ||||||| ||||||    
T  32619598 ttttggctatatttttagtactttt-ctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaa 32619680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 16593942 - 16593833
Alignment:
Q  88 tgatgattgagcatcatatgacattttgactatatttttagtactttttcttt-------gcatttgaagaaaaataagatgagagtcagagaagttgtc 180  Q
    |||||||  |||||||||||| |||||| |||| ||||||||| ||||| |||       ||||||||||| ||||||||| ||||| | || |||||||    
T  16593942 tgatgataaagcatcatatgatattttggctatgtttttagtatttttttttttttttttgcatttgaagacaaataagattagagttataggagttgtc 16593843  T
Q  181 aatggtttga 190  Q
    ||||||||||    
T  16593842 aatggtttga 16593833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 28278570 - 28278480
Alignment:
Q  123 ttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcact 214  Q
    ||||||||||||| ||||||||||||||  |||||||| |||||| |||| | || |||||||||||| ||| ||| |||||| || |||||    
T  28278570 ttttagtactttt-ctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaacatagtgtattattttcact 28278480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 35031701 - 35031763
Alignment:
Q  155 ataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    ||||||||||||  |||| |||||| |||||||||||||| |||||||||| || ||||||||    
T  35031701 ataagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcga 35031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 15829136 - 15829172
Alignment:
Q  158 agatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||| |||| |||||||||||||||||||||    
T  15829136 agatgagagttagaggagttgtcaatggtttgaggaa 15829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 17152166 - 17152202
Alignment:
Q  169 agagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| |||||||||||||||||||||||| |||||||    
T  17152166 agaggagttgtcaatggtttgaggaatattttgtatt 17152202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 21844766 - 21844706
Alignment:
Q  134 tttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||||||| ||||||| ||  | | |||| ||||||||||||||| |||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaa 21844706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 24047359 - 24047431
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| ||||||||||||| ||||||||| |  | | |||||| ||||||||||||| ||||| || |||||||    
T  24047359 ttttatttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttgtatt 24047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 315115 - 315246
Alignment:
Q  86 attgatgattgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatgg 185  Q
    ||||||||| ||| ||||||||| ||||||||||| ||||  ||||||||||||   ||||||||||||||||||||||||| |||| ||||||||||||    
T  315115 attgatgatagagtatcatatgatattttgactatgttttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatgg 315214  T
Q  186 tttgaggaatatattgtattcttctcactcga 217  Q
    ||||| |||||||||||||| || ||||||||    
T  315215 tttgaagaatatattgtattattgtcactcga 315246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 22067980 - 22067860
Alignment:
Q  97 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 196  Q
    ||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||| ||||||||||||||| | || ||||||||||||||||||||| |    
T  22067980 agcatcatatgacattttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaaca 22067881  T
Q  197 tattgtattcttctcactcga 217  Q
    || |||||| || ||||||||    
T  22067880 taatgtattgttttcactcga 22067860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 29544459 - 29544580
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||| ||||| | |||| |||||| || |||| ||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  29544459 gagcatcatatgatatttttggctatgtttttattaatttt-ctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaa 29544557  T
Q  195 tatattgtattcttctcactcga 217  Q
     |||||||||| || ||||||||    
T  29544558 catattgtattgttttcactcga 29544580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 7815267 - 7815383
Alignment:
Q  100 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 199  Q
    ||||||||| ||||||  ||| |||||||||||||||  ||||||||||||| ||||||||||||||| | || | ||||||||||||| || || ||||    
T  7815267 atcatatgatattttggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatat 7815366  T
Q  200 tgtattcttctcactcg 216  Q
    |||||| || |||||||    
T  7815367 tgtatttttttcactcg 7815383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 23124833 - 23124961
Alignment:
Q  88 tgatgattgagcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    ||||||| ||||||||| |||||||||  ||||| |||||||||||||  |||| |||||||||| ||||||||||||| | |||| |||||| | ||||    
T  23124833 tgatgatggagcatcatctgacattttttactatgtttttagtacttt--ctttacatttgaagacaaataagatgagatttagaggagttgttagtggt 23124930  T
Q  187 ttgaggaatatattgtattcttctcactcga 217  Q
     ||||||| |||||||||| || ||||||||    
T  23124931 ctgaggaacatattgtattgttttcactcga 23124961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 20446179 - 20446285
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||| ||||||| |||||  |||| |||||| ||||||||||||||||||||||| || |||||||||| | |||| ||||||||||||||| || ||     
T  20446179 gagcaacatatgatattttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaac 20446278  T
Q  196 atattgt 202  Q
    |||||||    
T  20446279 atattgt 20446285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 21471737 - 21471858
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||||| |||||||  ||| |||||||||||||||| ||||||||||||| ||||||||||| | | |||| | ||||||||| ||| | |||     
T  21471737 gagcatcatatgccattttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatgattttaagaac 21471836  T
Q  196 atattgtattcttctcactcga 217  Q
    ||||| |||| || ||||||||    
T  21471837 atattatattgttttcactcga 21471858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 1255340 - 1255267
Alignment:
Q  144 tttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||| |||||||| || ||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcga 1255267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 4092602 - 4092667
Alignment:
Q  86 attgatgattgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaaga 151  Q
    ||||||||  ||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4092602 attgatgacagagaatcatatgacatttttgctatatttttagtactttttctttgcatttgaaga 4092667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 9066073 - 9066193
Alignment:
Q  97 agcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||| ||||||||||||  ||||||||| ||||||||||  || | ||||||||| ||||||| ||| ||  |||||||||||||||| ||| |||||     
T  9066073 agcattatatgacattttttactatatttatagtacttttg-ttagaatttgaagacaaataagttgatagatagagaagttgtcaatgtttttaggaac 9066171  T
Q  196 atattgtattcttctcactcga 217  Q
    |||||||||| || ||||||||    
T  9066172 atattgtattgttttcactcga 9066193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 7142038 - 7142147
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||||||||| | |||| |||||| || |||| |||||||||| |||| ||||||| ||||||  | |  ||||||||||||||| |||||    
T  7142038 gagcatcatatgacatttttggctatgtttttaatagtttt-ctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggtttaaggaa 7142136  T
Q  195 tatattgtatt 205  Q
     ||||| ||||    
T  7142137 catattttatt 7142147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 18496498 - 18496603
Alignment:
Q  89 gatgattgagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtt 187  Q
    |||||| ||||| ||||||| ||||| | |||| ||||||||| |||| |||||||||||||| |||| ||| ||  | | ||||||||||||||| |||    
T  18496498 gatgatggagcaccatatgatattttaggctatgtttttagtagtttt-ctttgcatttgaaggaaaacaagttgcaatttagagaagttgtcaattgtt 18496596  T
Q  188 tgaggaa 194  Q
    |||||||    
T  18496597 tgaggaa 18496603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 21545957 - 21545853
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttct 210  Q
    |||||||||| ||||||||||||||  ||| |||| ||||| ||  ||||||| | | | | |||||||||||||||||||||| |||||||||| || |    
T  21545957 ttttgactatgtttttagtacttttcttttccatt-gaagacaac-aagatgataattaaataagttgtcaatggtttgaggaacatattgtattgtttt 21545860  T
Q  211 cactcga 217  Q
    |||||||    
T  21545859 cactcga 21545853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 20470935 - 20470867
Alignment:
Q  146 tgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcact 214  Q
    |||||| ||||||||||| | | |||| ||||||||||||||||||||| ||||| |||| || |||||    
T  20470935 tgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatattgttttcact 20470867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 2632581 - 2632502
Alignment:
Q  126 tagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||||||||||||||||||| ||||  ||||  |||||||| |||| ||||||  ||| ||| ||||| ||||||||||    
T  2632581 tagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatgattttaggaacatattgtatt 2632502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 9385465 - 9385537
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||| ||||||||||||| || |||||||||||  || | |||||| |||||||||| |||  |||||||||    
T  9385465 ttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaacttattgtatt 9385537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 9783158 - 9783039
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||  |||| |||||||||| |||| |||||||||| ||||||||||     
T  9783158 gagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaac 9783059  T
Q  196 atattgtattcttctcactc 215  Q
    |||||||||| || ||||||    
T  9783058 atattgtattgttttcactc 9783039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 25315416 - 25315288
Alignment:
Q  86 attgatgattgagcatcatatgacattttgactat-atttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatg 184  Q
    ||||||||  |||||||||||||||||||   |||  |||||||||| |||||||| |||||||||| ||||||||||||||  |||| |||||||||||    
T  25315416 attgatgaccgagcatcatatgacattttagttatgttttttagtac-ttttctttacatttgaagataaataagatgagagatagaggagttgtcaatg 25315318  T
Q  185 gtttgaggaatatattgtattcttctcact 214  Q
     ||||||||| |||||||||| || |||||    
T  25315317 ctttgaggaacatattgtattgttttcact 25315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 1676469 - 1676363
Alignment:
Q  97 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||||||||||| |  ||||||||| |||||||| |||| |||||||||| ||||||||||| ||  |||| |||||||||||||||||||||     
T  1676469 agcatcatatgacatttttggttatattttttgtactttt-ctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaac 1676371  T
Q  196 atattgta 203  Q
    ||||||||    
T  1676370 atattgta 1676363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 1682997 - 1682891
Alignment:
Q  97 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||||||||||| |  ||||||||| |||||||| |||| |||||||||| ||||||||||| ||  |||| |||||||||||||||||||||     
T  1682997 agcatcatatgacatttttggttatattttttgtactttt-ctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaac 1682899  T
Q  196 atattgta 203  Q
    ||||||||    
T  1682898 atattgta 1682891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 27302719 - 27302839
Alignment:
Q  97 agcatcatatgacattttgactatattttt-agtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||| ||||||||||||| ||||| | || |||| | ||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||||     
T  27302719 agcatcatataacattttgactatgttttttaataatttt-cgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaac 27302817  T
Q  196 atattgtattcttctcactcga 217  Q
    || ||||||| || ||||||||    
T  27302818 attttgtattgttttcactcga 27302839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 5906873 - 5906774
Alignment:
Q  117 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcg 216  Q
    |||| ||||||||||||||  |||||||||||||| ||| ||||||||||| |||| | ||||||||||||||||||| ||||| |||| || |||||||    
T  5906873 ctatgtttttagtactttta-tttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttcactcg 5906775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 4953613 - 4953741
Alignment:
Q  87 ttgatgattgagcatcatatgacattttgactatat-ttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatgg 185  Q
    |||||||  ||| ||||||||||||| ||| ||| | |||||||| |||||||||| ||||||||| |||||||||| |||  | || |||||| |||||    
T  4953613 ttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatgg 4953711  T
Q  186 tttgaggaatatattgtattcttctcactc 215  Q
    ||||||||| |||||||||| || ||||||    
T  4953712 tttgaggaacatattgtattgttttcactc 4953741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 18897934 - 18898052
Alignment:
Q  99 catcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatat 197  Q
    |||||||||||||||| | || | |||||| ||||||| ||||||||||||||| ||||||| ||||||  |||  | ||||||||||||| ||||| ||    
T  18897934 catcatatgacatttttggctgtgtttttactactttt-ctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacat 18898032  T
Q  198 attgtattcttctcactcga 217  Q
    |||||||| || ||||||||    
T  18898033 attgtattgttttcactcga 18898052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 12111505 - 12111398
Alignment:
Q  96 gagcatcatatgacattttgact-atatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||||||||   | || ||||||||||||||  |||||||||||||| ||| ||||||||| | |||| |||||||||||||||||||||    
T  12111505 gagcatcatatgacattttttgttatgtttttagtactttta-tttgcatttgaagacaaa-aagatgagaat-agaggagttgtcaatggtttgaggaa 12111409  T
Q  195 tatattgtatt 205  Q
     ||||||||||    
T  12111408 catattgtatt 12111398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 34864439 - 34864368
Alignment:
Q  122 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||| ||||| ||||||||| ||||||||| | ||| |||| |||||||||||||||||||||    
T  34864439 tttttagtactttt-ctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaa 34864368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 15192143 - 15192262
Alignment:
Q  96 gagcatcatatgacattttgact-atatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||||||||   | || ||||| |||||||| ||||||||||||||| |||||||||||||| | | | |||||| |||  |||| ||||    
T  15192143 gagcatcatatgacattttttgttatgtttttcgtactttt-ctttgcatttgaagacaaataagatgagagacgggggagttgttaattttttgtggaa 15192241  T
Q  195 tatattgtattcttctcactc 215  Q
     |||||||||| || ||||||    
T  15192242 catattgtattgttttcactc 15192262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 25050224 - 25050142
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||| |||| ||||||||| ||||| |||| ||||||||| ||||||||||| ||| |||||| || |||| |||||||||||    
T  25050224 ttttggctatgtttttagta-tttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgaggaa 25050142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 1696750 - 1696652
Alignment:
Q  88 tgatgattgagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    |||||||  |||||||||||||||||| | ||||||||  |||||||||  ||| |||||||||| ||||||||||||||  | || |||||||||||||    
T  1696750 tgatgataaagcatcatatgacatttttggctatattt--agtactttta-tttacatttgaagacaaataagatgagagatataggagttgtcaatggt 1696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 46647173 - 46647245
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||||||| |||||||| |||||||||  | | | |||||||||||||||||||| | |||||| |||||||    
T  46647173 ttttctttgtatttgaaggaaaataagagaaaatttagagaagttgtcaatggtttcaagaatattttgtatt 46647245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 31860039 - 31859957
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||| |||| ||||||||  ||||| ||||||||||||||||||||| | |  | | ||||||||||||||| ||||||||||    
T  31860039 ttttggctatgtttttagttattttt-tttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaa 31859957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 10320400 - 10320273
Alignment:
Q  90 atgattgagcatcatatgaca-ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggttt 188  Q
    ||||| ||||||||||||||| ||||  |||| |||||||||  |||||||| |||||||||| ||| ||| | || |  |||  |||||| ||| |||     
T  10320400 atgatagagcatcatatgacatttttcgctatgtttttagta-attttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagtta 10320302  T
Q  189 gaggaatatattgtattcttctcactcga 217  Q
    ||| || ||||||||||||| ||||||||    
T  10320301 gagaaacatattgtattcttttcactcga 10320273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 47024858 - 47024810
Alignment:
Q  169 agagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    |||| |||||||||||||||||  ||||||||||||| || ||||||||    
T  47024858 agagtagttgtcaatggtttgaaaaatatattgtattgttttcactcga 47024810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 8247832 - 8247714
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||| |||| || | ||||||||||||||||     
T  8247832 gagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaac 8247733  T
Q  196 atattgtattcttctcact 214  Q
    ||||| |||| || |||||    
T  8247732 atattttattattttcact 8247714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 12424089 - 12423968
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||  ||||| ||||||||||||||     
T  12424089 gagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaac 12423990  T
Q  196 atattgtattcttctcactcga 217  Q
    ||||  |||| || ||||||||    
T  12423989 atatgatattgttttcactcga 12423968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 21451989 - 21451868
Alignment:
Q  97 agcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaata 196  Q
    ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||  |||  ||||||||||||| | ||||| |    
T  21451989 agcatcatatgacattttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaaca 21451891  T
Q  197 tattgtattcttctcactcgact 219  Q
    ||||||||| || ||||||||||    
T  21451890 tattgtattattttcactcgact 21451868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 11770177 - 11770049
Alignment:
Q  88 tgatgattgagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    ||||||| |||||||| |||| ||||| | |||| |||||| |||| || ||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  11770177 tgatgatagagcatcacatgatatttttgtctatgtttttaatactatt-ctttgcatttgaagataaataagatgagagttagagaatttgtcaatggt 11770079  T
Q  187 ttgaggaatatattgtattcttctcactcg 216  Q
    || ||||| |||||||||| || |||||||    
T  11770078 ttaaggaacatattgtattgttttcactcg 11770049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 26657432 - 26657537
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttct 210  Q
    |||||||||| |||||| ||||||| ||||||||||||||| ||||| | ||||||  |||| ||||||||||||||||||||||||| |||||| || |    
T  26657432 ttttgactatgtttttattactttt-ctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataatgtattgtttt 26657530  T
Q  211 cactcga 217  Q
    |||||||    
T  26657531 cactcga 26657537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 30675423 - 30675545
Alignment:
Q  96 gagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||||||||   |||| ||||||| ||||||  ||| |||||| ||| ||||||||||| | | |||| |||||||||||||||||||||    
T  30675423 gagcatcatatgacattttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaa 30675522  T
Q  195 tatattgtattcttctcactcga 217  Q
     |||||||||| || ||||||||    
T  30675523 catattgtattgttttcactcga 30675545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 23519930 - 23519821
Alignment:
Q  97 agcatcatatgacattttgacta--tatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||| |||||||||  | |||||||||| |||||||||| |||||||| ||||| ||||||||  ||| ||||||| ||| ||||||||||    
T  23519930 agcatcatatgaccttttgactatgtttttttagtac-ttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatagtttgaggaa 23519832  T
Q  195 tatattgtatt 205  Q
     ||||||||||    
T  23519831 catattgtatt 23519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 30781700 - 30781809
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||  || |||||  |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||  ||  ||| || |||    
T  30781700 gagcatcatgcgatatttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaat 30781799  T
Q  196 atattgtatt 205  Q
    ||||||||||    
T  30781800 atattgtatt 30781809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 12810278 - 12810371
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| ||||| |||||||||||||| ||||  |||| |||| ||||||| ||||||  |||| ||||||||||||||||||||| ||||||||||    
T  12810278 tttttactatgtttttagtactttt-ctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtatt 12810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 24903435 - 24903361
Alignment:
Q  131 ctttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||||||||||||||||||| ||||| ||||||| | || | ||||||||||| ||||||||| ||||||||||    
T  24903435 ctttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatt 24903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 50047158 - 50047242
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    ||||||||||||||||||| ||||||||||| |   |||| ||||||||||| |||||| || |||||||||| || ||||||||    
T  50047158 ttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcga 50047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 23223367 - 23223460
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||| |||| |||| ||||||||| ||||||||||  ||| || ||||||| |||| |||| ||||||||||||||||||||| | ||||||||    
T  23223367 ttttggctatgttttaagtactttt-ctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaacacattgtatt 23223460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 25266492 - 25266399
Alignment:
Q  122 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    |||||||||||||| ||||||||||||||| | | ||||| ||||  |||||||||||||||||| |||  || |||||||||| || ||||||||    
T  25266492 tttttagtactttt-ctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcga 25266399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 25730718 - 25730649
Alignment:
Q  123 ttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 193  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||| ||||  | ||||||||| |||||||    
T  25730718 ttttagtactttt-ctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgagga 25730649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 18301143 - 18301071
Alignment:
Q  133 ttttctttgcatttgaagaaaaataaga--tgagagtcagagaagttgtcaatggtttgaggaatatattgta 203  Q
    ||||||||||||||||||| ||| || |  ||||||| | ||  |||||||||||||||||||||||||||||    
T  18301143 ttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgaggaatatattgta 18301071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 25494597 - 25494548
Alignment:
Q  153 aaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgt 202  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||| |||||||    
T  25494597 aaataggatgaaagttagaggagttgtcaatggtttgaggaacatattgt 25494548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 16054234 - 16054355
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||| ||| |||||     
T  16054234 gagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaac 16054333  T
Q  196 atattgtattcttctcactcga 217  Q
    || ||||||| || ||||||||    
T  16054334 attttgtattgttttcactcga 16054355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 13082109 - 13082017
Alignment:
Q  99 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgag 191  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  13082109 catcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgag 13082017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 12956445 - 12956550
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttct 210  Q
    ||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||| || |    
T  12956445 ttttgtctatgtttttagtactttt-ctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgtttt 12956543  T
Q  211 cactcga 217  Q
    |||||||    
T  12956544 cactcga 12956550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 24120193 - 24120280
Alignment:
Q  117 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  24120193 ctatgtttttagtactttt-ctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatatattgtatt 24120280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 29047491 - 29047373
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||||||   |||||     
T  29047491 gagcatcatatgataatttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaac 29047395  T
Q  196 atattgtattcttctcactcga 217  Q
    | |||||||| || ||||||||    
T  29047394 acattgtattgttttcactcga 29047373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 14977290 - 14977173
Alignment:
Q  88 tgatgattgagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    ||||||| | ||||||||||| ||||| | |||| ||||||| |||||| |||||||||| |||| ||||||||||||||| |||| |||||||||||||    
T  14977290 tgatgatagcgcatcatatgatatttttaactatgtttttagcactttt-ctttgcattttaagacaaataagatgagagttagaggagttgtcaatggt 14977192  T
Q  187 ttgaggaatatattgtatt 205  Q
    |||||||| ||||||||||    
T  14977191 ttgaggaacatattgtatt 14977173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 28901515 - 28901394
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||| ||||| | ||||  ||||| ||||||| ||||||||||||| | ||||||| ||||||  |||| |||||||||||||||||||||    
T  28901515 gagcatcatatgaaatttttggctatgcttttaatactttt-ctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaa 28901417  T
Q  195 tatattgtattcttctcactcga 217  Q
     |||||||||| || ||||||||    
T  28901416 catattgtattgttttcactcga 28901394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 16052452 - 16052358
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttga 190  Q
    ||||||||||||| ||||| | |||| ||||||||||||||  ||||||||||| || |||||| |||||||| |||| |||||||||||||||||    
T  16052452 gagcatcatatgatatttttggctatgtttttagtactttta-tttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 5570280 - 5570195
Alignment:
Q  132 tttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    ||||| |||||||||||||||||||||||||||| |   || ||||||||||  ||||||||| |||||||||| || ||||||||    
T  5570280 tttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattgttttcactcga 5570195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 22894709 - 22894584
Alignment:
Q  96 gagcatcatatgacattttgac-tatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaa----gttgtcaatggtttga 190  Q
    ||||||||||||||||||| |  ||| |||||||||||||| ||| ||||||||||  ||||||| ||||||  ||||||    ||||||||||||||||    
T  22894709 gagcatcatatgacatttttaggtatgtttttagtactttt-cttcgcatttgaagccaaataagttgagagatagagaactaagttgtcaatggtttga 22894611  T
Q  191 ggaatatattgtattcttctcactcga 217  Q
    || | |||||||||||||  |||||||    
T  22894610 ggtacatattgtattctttacactcga 22894584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 26882352 - 26882469
Alignment:
Q  100 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 199  Q
    |||||||||||| ||| |||| |||||||||||||||||| ||| | ||||| |||||| |||||| | | || ||||| ||||||||| ||||  |||     
T  26882352 atcatatgacatcttggctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggtttaaggagcataa 26882451  T
Q  200 tgtattcttctcactcga 217  Q
    |||||| || ||||||||    
T  26882452 tgtattgttttcactcga 26882469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 11310379 - 11310287
Alignment:
Q  96 gagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggttt 188  Q
    ||||||||||||| |||||   |||| |||||||||||| | ||||||||||||||||||||||| ||||||  ||| || |||||||||||||    
T  11310379 gagcatcatatgatattttttgctatgtttttagtacttat-ctttgcatttgaagaaaaataagttgagagatagaaaaattgtcaatggttt 11310287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 6358645 - 6358747
Alignment:
Q  103 atatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattg 201  Q
    |||||||||||||  |||| ||||||||||||||  |||||||||||||| | ||||| ||||||  |||| |||||| ||||||||| | || ||||||    
T  6358645 atatgacattttgggctatgtttttagtactttta-tttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattg 6358743  T
Q  202 tatt 205  Q
    ||||    
T  6358744 tatt 6358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 32239243 - 32239336
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||| |||| ||||||| |||||| |||| |||||||||| | ||||||| | | | |||| |||||||||||||||||| || ||||||||||    
T  32239243 ttttggctatgtttttagcactttt-ctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtatt 32239336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 31436409 - 31436519
Alignment:
Q  86 attgatgattgagcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatg 184  Q
    ||||||||| ||| ||||||||| |||||  ||||||||||||||  ||||  | |||||||||||  ||||||||||  | | |||| |||||||||||    
T  31436409 attgatgatggagtatcatatgatattttatactatatttttagttatttta-tctgcatttgaaggcaaataagatgtaatttagaggagttgtcaatg 31436507  T
Q  185 gtttgaggaata 196  Q
     |||||||||||    
T  31436508 atttgaggaata 31436519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 10867001 - 10867037
Alignment:
Q  169 agagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| |||||||||||||||||||||||| |||||||    
T  10867001 agagtagttgtcaatggtttgaggaatattttgtatt 10867037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 12340187 - 12340071
Alignment:
Q  96 gagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||||||     
T  12340187 gagcatcatatgacattttggctatgtttttagta--ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaac 12340090  T
Q  196 atattgtattcttctcact 214  Q
    ||||| |||| || |||||    
T  12340089 atattatattattttcact 12340071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 17382211 - 17382091
Alignment:
Q  95 tgagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgagga 193  Q
    |||||||||||||| |||||   |||| | ||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  17382211 tgagcatcatatgatattttttgctatgtgtttagtacttttt-tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgagga 17382113  T
Q  194 atatattgtattcttctcactc 215  Q
    | |||||||||| || ||||||    
T  17382112 acatattgtattgttttcactc 17382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 217
Target Start/End: Original strand, 15205572 - 15205704
Alignment:
Q  83 atcattgatgattgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaa 182  Q
    |||||||||||  ||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| || | |||||||||  |||| | || ||||||||     
T  15205572 atcattgatgacagagcatcatatgatattttgactatgtttttagtattttttatttgcatttaaatacaaataagat--gagttaaaggagttgtcag 15205669  T
Q  183 tggtttgaggaatatattgtattcttctcactcga 217  Q
    |||||||||||| |||||||||| || ||||||||    
T  15205670 tggtttgaggaacatattgtattgttttcactcga 15205704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 16634000 - 16634107
Alignment:
Q  110 attttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttc 209  Q
    ||||||||||| ||||||||||||||| ||| | ||| ||||||||||||||||||||  ||  |||||||||||||||||| || |||||||||| ||     
T  16634000 attttgactatgtttttagtactttttttttacgtttaaagaaaaataagatgagagttggatgagttgtcaatggtttgagaaacatattgtattgttt 16634099  T
Q  210 tcactcga 217  Q
    ||||||||    
T  16634100 tcactcga 16634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 25594851 - 25594749
Alignment:
Q  111 ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttct 210  Q
    ||||| |||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| | || |||||||||||||||| |||||||||| || |    
T  25594851 ttttggctatgtttttagtactttta-tttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgtttt 25594753  T
Q  211 cact 214  Q
    ||||    
T  25594752 cact 25594749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 24841693 - 24841814
Alignment:
Q  96 gagcatcatatgacattttga-ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||||||||   |||| ||||||||||| || ||||||||||||||| ||||||| | ||||  |||| |||| ||||||||||||||||    
T  24841693 gagcatcatatgacattttttgctatgtttttagtactatt-ctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaa 24841791  T
Q  195 tatattgtattcttctcactcga 217  Q
     |||||||||| || ||||||||    
T  24841792 catattgtattgttttcactcga 24841814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 24517335 - 24517403
Alignment:
Q  137 ctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    ||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||| ||||||||||    
T  24517335 ctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtatt 24517403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 17027467 - 17027585
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||||||||| | |||| |||||||||||||| |||||||||| |||| || |||||||||||| ||||  || ||||| |||||||||||    
T  17027467 gagcatcatatgacatttttggctatgtttttagtactttt-ctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaa 17027565  T
Q  195 tatattgtattcttctcact 214  Q
     |||||| ||| || |||||    
T  17027566 catattgaattgttttcact 17027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 18222455 - 18222542
Alignment:
Q  117 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||||||||||||| ||||| |||  ||||||||| ||||||||||||||| |||  |||||||||||||||||| || ||||||||||    
T  18222455 ctatatttttagta-tttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtatt 18222542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 30072133 - 30072216
Alignment:
Q  110 attttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||| |||| |||| ||||||||| ||||| ||||||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  30072133 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaa 30072216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 22229740 - 22229819
Alignment:
Q  87 ttgatgattgagcatcatatgacattttgactatattttt-agtactttttctttgcatttgaagaaaaataagatgagag 166  Q
    |||||||  |||||||||||| ||||||| |||| ||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  22229740 ttgatgacagagcatcatatgtcattttggctatgttttttagtactttt-ctttgcatttgaagacaaataagatgagag 22229819  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 25075408 - 25075328
Alignment:
Q  99 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtc 180  Q
    |||||||| |||||||| |||| ||||||||| |||| ||||||| ||||||| |||||| || ||||| |||| |||||||    
T  25075408 catcatattacattttggctatgtttttagtaatttt-ctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 25133377 - 25133297
Alignment:
Q  99 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtc 180  Q
    |||||||| |||||||| |||| ||||||||| |||| ||||||| ||||||| |||||| || ||||| |||| |||||||    
T  25133377 catcatattacattttggctatgtttttagtaatttt-ctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 26330206 - 26330125
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcact 214  Q
    |||||||||||||  |||| ||||||| ||||||   ||| ||||||||||||| | |||||||||||||||| || |||||    
T  26330206 ttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgtattgttttcact 26330125  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 11274479 - 11274411
Alignment:
Q  122 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgag 191  Q
    |||||||||||||| |||||||||| ||||  |||||||| ||||  |||  ||||||||||||||||||    
T  11274479 tttttagtactttt-ctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgag 11274411  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 16622819 - 16622733
Alignment:
Q  117 ctatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||| ||||||||| |||||  || |||||||||| ||||| ||  ||||| | || ||||||||||||||||||||| || |||||||    
T  16622819 ctatgtttttagtatttttt--ttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaacatgttgtatt 16622733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 23157926 - 23157865
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    |||||||||||||||||| ||||| ||| |  | | |||| |||||||||||||||||||||    
T  23157926 ttttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgaggaa 23157865  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 22754898 - 22754957
Alignment:
Q  105 atgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgaga 165  Q
    |||||||||||  ||| |||||||||| ||| |||||||||| |||| |||||||||||||    
T  22754898 atgacattttggatatgtttttagtacgttt-ctttgcatttaaagacaaataagatgaga 22754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 22968013 - 22967910
Alignment:
Q  100 atcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatata 198  Q
    ||||||||| ||||| | |||| ||||||||| |||| |||||||| | |||| ||||||||||    | |||| |||||| |||||||||||||| |||    
T  22968013 atcatatgatattttaggctatgtttttagtagtttt-ctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttgaggaacata 22967915  T
Q  199 ttgta 203  Q
    |||||    
T  22967914 ttgta 22967910  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 13759622 - 13759505
Alignment:
Q  100 atcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatat 199  Q
    |||||||||  |||||| | | |||||| |||||||| |||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  13759622 atcatatgatcttttgattgtgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatat 13759523  T
Q  200 tgtattcttctcactcga 217  Q
    || ||| || ||||||||    
T  13759522 tgaattgttttcactcga 13759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 15998454 - 15998563
Alignment:
Q  99 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatata 198  Q
    ||||||||||||||||| |||| ||||| |||| |||||||||||||||||| ||||| | |||||||| |||| |||  || ||||||||||||| |||    
T  15998454 catcatatgacattttggctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggtttgaggaaaata 15998553  T
Q  199 ttgtattctt 208  Q
    ||||||||||    
T  15998554 ttgtattctt 15998563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 15574868 - 15574983
Alignment:
Q  99 catcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatata 198  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||||||| | |||| | |||||||| |||||||||| ||     
T  15574868 catcatatgacattttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaat-gtttgaggaacatg 15574966  T
Q  199 ttgtattcttctcactc 215  Q
    || |||| || ||||||    
T  15574967 ttatattgttttcactc 15574983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 30355266 - 30355375
Alignment:
Q  96 gagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||| ||||| | |||| |||||||||||||| ||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||  ||    
T  30355266 gagcatcatatgatatttttggctatgtttttagtacttttactt-gcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgataaa 30355364  T
Q  195 tatattgtatt 205  Q
     ||||||||||    
T  30355365 catattgtatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 17860583 - 17860502
Alignment:
Q  136 tctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    |||||| |||||| || |||||| |  ||||| |||||| ||||||||||||||||||| || ||||||| || ||||||||    
T  17860583 tctttgtatttgatgataaataataaaagagttagagaatttgtcaatggtttgaggaacattttgtattattttcactcga 17860502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 15576344 - 15576254
Alignment:
Q  89 gatgattgagcatcatatgaca-ttttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgt 179  Q
    |||||| ||||||||||||| | ||||| |||| |||||||||| ||||||||| |||| |||| ||||| ||||||| | |||| ||||||    
T  15576344 gatgatggagcatcatatgatatttttggctatgtttttagtac-ttttctttgaatttaaagacaaataggatgagaattagaggagttgt 15576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 14924555 - 14924494
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaa 194  Q
    ||||||||||||||||||  |||||| |||  | | |||| |||||||||||||||||||||    
T  14924555 ttttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaa 14924494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 16527878 - 16527951
Alignment:
Q  144 tttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattcttctcactcga 217  Q
    |||||||| ||||||||||||||| |||| |||||||  ||||||||| |  ||||| |||| || ||||||||    
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattgttttcactcga 16527951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 16387386 - 16387314
Alignment:
Q  133 ttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtatt 205  Q
    |||||||||  ||||||||  |||||||||  | | |||  |||||||||||||||||||||| |||||||||    
T  16387386 ttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaatttattgtatt 16387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 446936 - 447054
Alignment:
Q  87 ttgatgattgagcatcatatgacattttgactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    |||||||  ||||||||||||| |||||  |||| |||||||||||||| |||| |||||||||| |||||||||||||||| ||| | ||||  ||| |    
T  446936 ttgatgacagagcatcatatgatatttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgagagtctgaggaattgttgatgat 447035  T
Q  187 ttgaggaatatattgtatt 205  Q
    || ||||| ||||||||||    
T  447036 tttaggaacatattgtatt 447054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 8892 - 8761
Alignment:
Q  88 tgatgattgagcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggt 186  Q
    ||||||| || |||||||||| ||||| |  ||| ||||||||||||||  ||| ||||| ||||||||||||||||| || |||| | |||||||||||    
T  8892 tgatgatggaacatcatatgatatttttggttatttttttagtacttttatttt-cattttaagaaaaataagatgagggttagaggatttgtcaatggt 8794  T
Q  187 ttgaggaatatattgtattcttctcactcgact 219  Q
    | ||||| | ||||||||| || ||||||||||    
T  8793 tagaggattgtattgtattgttttcactcgact 8761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 13219 - 13134
Alignment:
Q  122 tttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaatatattgtattctt 208  Q
    ||||||||||||||  ||| ||| | |||| ||||||||||||||| |||| | || ||||||||||| ||| ||||||||||||||    
T  13219 tttttagtacttttatttt-catattaagacaaataagatgagagttagaggatttttcaatggtttgtggattatattgtattctt 13134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 6137 - 6255
Alignment:
Q  97 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagatgagagtcagagaagttgtcaatggtttgaggaat 195  Q
    ||||||||||| |||||| | |||| |||||||||||||| |||| ||||| || | ||||||||||||||| | |  |||| ||||||||||||||||     
T  6137 agcatcatatggcatttttggctatgtttttagtactttt-ctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaac 6235  T
Q  196 atattgtattcttctcactc 215  Q
    ||| |||||| || ||||||    
T  6236 ataatgtattattttcactc 6255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 21337 - 21402
Alignment:
Q  96 gagcatcatatgacattttg-actatatttttagtactttttctttgcatttgaagaaaaataagat 161  Q
    ||||||||||||| |||||  | ||| ||||||||  ||||||||||||||||||||||||||||||    
T  21337 gagcatcatatgatattttttattatgtttttagtg-tttttctttgcatttgaagaaaaataagat 21402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 27128 - 27064
Alignment:
Q  97 agcatcatatgacatttt-gactatatttttagtactttttctttgcatttgaagaaaaataagat 161  Q
    ||||||| |||| ||||| | |||| |||||||||||||| ||||||||||||||| |||||||||    
T  27128 agcatcacatgatattttcggctatgtttttagtactttt-ctttgcatttgaagataaataagat 27064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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