View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14965_high_4 (Length: 482)
Name: NF14965_high_4
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Complemental strand, 48175061 - 48174603
Alignment:
| Q |
13 |
gtatataattaagtgcatgtaccccaaaatcgagaagcacnnnnnnnttccattatgcatcctattcctaacttcctgagggctatgcacgattgaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48175061 |
gtatataattaagtgcatgtaccccaaaatcgagaagcacaaaaaaattccattatgcatcctattcctaacttcctgagggctatgcacgattgaacat |
48174962 |
T |
|
| Q |
113 |
aacttagatactataagcacttcttgtcctactcgatacggaggagtcacgagagctataaatcaatgagcaaaatgataatcacaaatttattctttag |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48174961 |
aacttagatactataagcgcttcttgtcctactcgatacggaggagtcacgagagcta-aaatcaatgagcaagatgataatcacaaatttattctttag |
48174863 |
T |
|
| Q |
213 |
cctaaaagaataataatggataactaggaattactgtgaacaccttttttactttagtcattttgactagtatttatgctttgcaattgctaaggaatca |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48174862 |
cctaaaagaataataatggataattaggaattactgtgaacaccttttttactttagtcattttgactagtatttatgctttgcaattgctaaggaatca |
48174763 |
T |
|
| Q |
313 |
atggtgtacgtttaattgaatatacttcagacagagtcacaggttttatcaaagaaaaaagacataagtcgtaggaacatgttagttaattagtcccatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48174762 |
atggtgtacgtttaattgaatatacttcagacagagtcacaggttttatcaaagaaaaaagacataagtcgtaggaacatgttagttaattagtcccatt |
48174663 |
T |
|
| Q |
413 |
taattaggattggactaaaggaagatttgggttgaagaggatatttctaagtattatcta |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48174662 |
taattaggattggactaaaggaagatttgggttgaagaggatatttctaagtattatcta |
48174603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University