View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14965_high_5 (Length: 477)
Name: NF14965_high_5
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 127 - 468
Target Start/End: Complemental strand, 9122647 - 9122310
Alignment:
| Q |
127 |
gcattcattgttcgtaccctttcacgatgatataatatcaacaagaaattgcacaaattagatttgatggttaaaattgttgcataatgtcttaagactt |
226 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
9122647 |
gcattctttgttcttaccctttcacgatgatataatatcaacaagcaattgcacaaattagatttaatggttaaaattgttgcataatgcctta-gactt |
9122549 |
T |
|
| Q |
227 |
ctttaacaagagttgctaaggatacataaaaaataatgagatttgtgctcgttgaaatgattgaatagggggctcttgtgtcatgtataatttttgcata |
326 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
9122548 |
---taataagagttgctaaggatgcataaaaaataaggagatttgtgctcgttgaaatgattgaataaggggctattgtgtcatgtataatttttgcata |
9122452 |
T |
|
| Q |
327 |
gttttatctcatttcacatgtttctaagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgt |
426 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||||| || |
|
|
| T |
9122451 |
ttcttatctcatttcacatgtttctaagcctaagagtgaaggagagttgggtaacaaagatctaagattggttaatcttgtccttttgggaaagtggcgt |
9122352 |
T |
|
| Q |
427 |
tggaggttgatcacaagatgggaggctctgtggaaagatatt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122351 |
tggaggttgatcacaagatgggaggctctgtggaaagatatt |
9122310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 18101525 - 18101649
Alignment:
| Q |
344 |
atgtttctaagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaag |
443 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||||||| |||||| |||||||||||||||||| ||| || | ||||| |||||||||| |||| || |
|
|
| T |
18101525 |
atgtttataagcctaagaatgaaggagggttgggtattagagatttaagattggttaatcttgccctattagggaagtgacgttggaggtttttcacgag |
18101624 |
T |
|
| Q |
444 |
atgggaggctctgtggaaagatatt |
468 |
Q |
| |
|
| |||||||| |||||||||||||| |
|
|
| T |
18101625 |
aggggaggctttgtggaaagatatt |
18101649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9124497 - 9124448
Alignment:
| Q |
3 |
aatacatgctagaataatttaggcaagttaatgacattaaaccttcaatt |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9124497 |
aatacatgctagaataatttaggcaagttaatgacattaaaccttcaatt |
9124448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 5219475 - 5219599
Alignment:
| Q |
344 |
atgtttctaagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaag |
443 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| ||||||||||||||||||||| || ||||| |||||| | || || |||||| ||| ||||| |
|
|
| T |
5219475 |
atgtttgtaagcctaagagtgaaggagggttaggtatcagagatctaagattgattgatctttcccttttggggaattgacgttggacgtttatcactga |
5219574 |
T |
|
| Q |
444 |
atgggaggctctgtggaaagatatt |
468 |
Q |
| |
|
| |||||||| |||||||||||||| |
|
|
| T |
5219575 |
aggggaggctttgtggaaagatatt |
5219599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 9123585 - 9123527
Alignment:
| Q |
75 |
gccatgtcttgtatatacat-tgtctaattcctacctaaatgcaataagtatcgcattc |
132 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
9123585 |
gccaagtcttgcatatacatatgtctaattcctacctaaatgcaataattattgcattc |
9123527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 466
Target Start/End: Complemental strand, 23115483 - 23115369
Alignment:
| Q |
351 |
taagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggag |
450 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||| || ||||||| |||||||||| |||||| | |||||| ||| |||||||| |||| || ||||| |
|
|
| T |
23115483 |
taagccaaagagtgaaggagggttgggtatcagacatttaagattagttaatcttgccctttt-gggaagtggagttagaggttgaccacatgaagggag |
23115385 |
T |
|
| Q |
451 |
gctctgtggaaagata |
466 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
23115384 |
gctttgaggaaagata |
23115369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 7809256 - 7809139
Alignment:
| Q |
351 |
taagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggag |
450 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||||||| ||||| ||||||||||| || | | |||||| |||||||||||||||| || ||||| |
|
|
| T |
7809256 |
taagcctaagagtgcaggaggattgggtattagagatctatgattgattaatcttgtctttgtagggaagtggcattggaggttgatcacaggaggggag |
7809157 |
T |
|
| Q |
451 |
gctctgtggaaagatatt |
468 |
Q |
| |
|
| | ||| |||||||||| |
|
|
| T |
7809156 |
gttttgttgaaagatatt |
7809139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 468
Target Start/End: Complemental strand, 12545954 - 12545837
Alignment:
| Q |
351 |
taagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggag |
450 |
Q |
| |
|
||||| || ||||||||||| ||| ||||||||| |||||||||| ||||||||| |||||| | |||||| |||| || ||||||||| || || || |
|
|
| T |
12545954 |
taagcttaagagtgaaggagggttaggtatcagatatctaagattagttaatctttcccttttggggaagtggcgttgtagattgatcacaggagggaag |
12545855 |
T |
|
| Q |
451 |
gctctgtggaaagatatt |
468 |
Q |
| |
|
||| |||| |||||||| |
|
|
| T |
12545854 |
gctttgtgtgaagatatt |
12545837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 2487630 - 2487755
Alignment:
| Q |
344 |
atgtttctaagcctacgagtgaaggagagttgggtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaag |
443 |
Q |
| |
|
|||||| | |||||| ||||||| ||| |||| |||||| || |||||||||||||||||| ||||| | |||||||| ||||||||||||| | | |
|
|
| T |
2487630 |
atgtttgttagcctaagagtgaatgagggttgagtatcaaaggtctaagattggttaatctaactcttttgggcaagtggtgatggaggttgatcaaagg |
2487729 |
T |
|
| Q |
444 |
atg-ggaggctctgtggaaagatatt |
468 |
Q |
| |
|
| ||||||| |||||||||||||| |
|
|
| T |
2487730 |
gggaggaggctttgtggaaagatatt |
2487755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 13956040 - 13956107
Alignment:
| Q |
377 |
gtatcagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaaga |
444 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
13956040 |
gtatcagagatttaagattagttaatctttcccttttgaggaagtggcgttggaggttgatcacaaga |
13956107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University