View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_1 (Length: 674)
Name: NF14965_low_1
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 232 - 660
Target Start/End: Original strand, 45601559 - 45601986
Alignment:
| Q |
232 |
ttagcatgcttcttaaaagaaaatgtcagacaatatgcatgatttcgtcctcctaatgatttccataacccaagtttgaacaccaaatgatgacgatgat |
331 |
Q |
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| T |
45601559 |
ttagcatgcttcttaaaagaaaatgtcagacaatatgcatgatttcgtcctcctaatgatt-ccataacccaagtttgaacaccaaatgatgacgatgat |
45601657 |
T |
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| Q |
332 |
gataaattttgatggtgctgtaaggacttggtagtaggtatgaatcatgatatgttaaactagaaacgctgtcattttctccannnnnnngcatcgaaat |
431 |
Q |
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| T |
45601658 |
gataaattttgatggtgctgtaaggacttggtagtaggtatgaatcatgatatgttaaactagaaacgctgtcattttctccatttttttgcatcgaaat |
45601757 |
T |
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| Q |
432 |
tctgtggtcacaaacattaagttatggtgtagcattttgaatttgatcgataatggcgaagaaaacgctaatgagcgatcaacacgactggggaatttgt |
531 |
Q |
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| T |
45601758 |
tatgtggtcacaaacattaagttatggtgtagcattttgaatttgatggataatggcgaagaaaacgctaatgagcgatcaacacgactggggaatttgt |
45601857 |
T |
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| Q |
532 |
agaataaagtgaatgcaatgtgcacgataagttaatgggagtataagcaaccactaagatagaacttcattatcattattgtccctttggaatggaataa |
631 |
Q |
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| T |
45601858 |
agaataaagtgaatgcaatgtgcacgataagttaatgggagtataagcaaccactaagatagaacttcattatcattattgtccctttggaatggaataa |
45601957 |
T |
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| Q |
632 |
gtgtggcacatcaacagcaccaacctatg |
660 |
Q |
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| T |
45601958 |
gtgtggcacatcaacaacaccaacctatg |
45601986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 45601345 - 45601494
Alignment:
| Q |
18 |
aatttgttgaaatgttgcaacttagagagtgcattgctaccacttgattgtgtattttccttcttttaggagcaaaagaggggaaagagctaatttgtat |
117 |
Q |
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| T |
45601345 |
aatttgttgaaatgttgcaacttagagagtgcattgctaccacttgattgtttattttccttcttttaggagcaaaagaggggaaagagctaatttgtat |
45601444 |
T |
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| Q |
118 |
tattttgcgttacaattgttaaaaattgatactaacttgacatcttcgtg |
167 |
Q |
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| T |
45601445 |
tattttgcgttacaattgttaaaaattgatactaacttgacatcttcgtg |
45601494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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