View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14965_low_11 (Length: 396)

Name: NF14965_low_11
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14965_low_11
NF14965_low_11
[»] chr5 (3 HSPs)
chr5 (19-396)||(42770337-42770714)
chr5 (206-244)||(695658-695696)
chr5 (206-239)||(20044784-20044817)
[»] chr4 (4 HSPs)
chr4 (203-265)||(16186309-16186371)
chr4 (202-244)||(3937701-3937743)
chr4 (206-244)||(38270478-38270516)
chr4 (213-244)||(47564532-47564563)
[»] chr1 (7 HSPs)
chr1 (327-396)||(15669733-15669802)
chr1 (354-396)||(8347610-8347652)
chr1 (206-244)||(25248989-25249027)
chr1 (206-244)||(25251750-25251788)
chr1 (354-396)||(8349390-8349432)
chr1 (206-244)||(17186623-17186661)
chr1 (354-396)||(49495540-49495582)
[»] chr6 (6 HSPs)
chr6 (38-101)||(1310672-1310736)
chr6 (206-244)||(13039536-13039574)
chr6 (201-244)||(20219934-20219977)
chr6 (206-244)||(13056976-13057014)
chr6 (354-396)||(15719580-15719622)
chr6 (206-244)||(24338963-24339001)
[»] chr7 (3 HSPs)
chr7 (205-244)||(44724356-44724395)
chr7 (213-244)||(27833128-27833159)
chr7 (354-396)||(24817687-24817729)
[»] chr2 (3 HSPs)
chr2 (358-393)||(37963269-37963304)
chr2 (206-244)||(15539970-15540008)
chr2 (206-244)||(22163420-22163458)
[»] chr8 (4 HSPs)
chr8 (206-244)||(26775005-26775043)
chr8 (358-392)||(27910973-27911007)
chr8 (358-392)||(27957392-27957426)
chr8 (206-244)||(33541861-33541899)
[»] chr3 (4 HSPs)
chr3 (358-396)||(1620730-1620768)
chr3 (206-244)||(1627175-1627213)
chr3 (206-244)||(28137766-28137804)
chr3 (359-396)||(1618995-1619032)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 42770337 - 42770714
Alignment:
Q  19 agtatcagattcaaaacacctaaatccaagtctcaacacttttttgtaggattcaaaacagccatgttcacgaaatcctaatttagttaaaattgttgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770337 agtatcagattcaaaacacctaaatccaagtctcaacacttttttgtaggattcaaaacagccatgttcacgaaatcctaatttagttaaaattgttgaa 42770436  T
Q  119 tgtcataagtaaccaaacatttatttatttaggttgtagctcctgggatctattgtgcacatgatacaaagaagtaagcagtcctcaaaattgaaattct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770437 tgtcataagtaaccaaacatttatttatttaggttgtagctcctgggatctattgtgcacatgatacaaagaagtaagcagtcctcaaaattgaaattct 42770536  T
Q  219 ggaagcagaaaatcggtggccgatttatggaatccggggcccgattttgcagtgctattgcagccttttgatgcgtgaattttcgatgcccacggtgaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770537 ggaagcagaaaatcggtggccgatttatggaatccggggcccgattttgcagtgctattgcagccttttgatgcgtgaattttcgatgcccacggtgaaa 42770636  T
Q  319 attggtggccgatgtgtcataacagcatatgtttgaaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  42770637 attggtggccgatgtgtcataacaacatatttttgaaacgtatttttatgggccagatttgttccaattttatgaggg 42770714  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 695658 - 695696
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  695658 aaattgaaattctggaagctgaaaattggtggccgattt 695696  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 20044784 - 20044817
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggcc 239  Q
    |||||| |||||||||||||||||||||||||||    
T  20044784 aaattggaattctggaagcagaaaatcggtggcc 20044817  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 16186371 - 16186309
Alignment:
Q  203 tcaaaattgaaattctggaagcagaaaatcggtggccgatttatggaatccggggcccgattt 265  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  16186371 tcaaaattggaattctggaagcagaaaatcggtggccaatttatggaaatcggggcccgattt 16186309  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 3937743 - 3937701
Alignment:
Q  202 ctcaaaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  3937743 ctcaaaattggaattctgaaagcagaaaatcggtggccgattt 3937701  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 38270516 - 38270478
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38270516 aaattgaaattctggtagcagaaaatcggtggccgattt 38270478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 47564532 - 47564563
Alignment:
Q  213 aattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||||||||||||||||||||||||    
T  47564532 aattctggaagcagaaaatcggtggccgattt 47564563  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 15669802 - 15669733
Alignment:
Q  327 ccgatgtgtcataacagcatatgtttgaaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  15669802 ccgatgtgtcgtaacagcatattttttaaacgtatttttatgggccagatttgttccagttttttgaggg 15669733  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 8347652 - 8347610
Alignment:
Q  354 aaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  8347652 aaacgtatttttatgggtcagatttgttccaattttatgaggg 8347610  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 25249027 - 25248989
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25249027 aaattggaattctggaagcagaaaatcggtggccgattt 25248989  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 25251788 - 25251750
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25251788 aaattggaattctggaagcagaaaatcggtggccgattt 25251750  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 8349432 - 8349390
Alignment:
Q  354 aaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||    
T  8349432 aaacgtaattttatgggtcagatttgttccaattttatgaggg 8349390  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 17186661 - 17186623
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  17186661 aaattgaaaatctggaagcagaaaatcggtggctgattt 17186623  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 49495582 - 49495540
Alignment:
Q  354 aaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    ||||||||||||||| |||||| |||||| |||||||||||||    
T  49495582 aaacgtatttttatgagccagatttgttcgaattttatgaggg 49495540  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 1310672 - 1310736
Alignment:
Q  38 ctaaatccaagtctcaacacttttttgtagga-ttcaaaacagccatgttcacgaaatcctaatt 101  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||  ||||||||||    
T  1310672 ctaattccaagtctcaacacttatttgtaggatttcaaaacaaccatgttcacccaatcctaatt 1310736  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 13039536 - 13039574
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  13039536 aaattgaaattctggaagcagaaaaccggtggccgattt 13039574  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 20219934 - 20219977
Alignment:
Q  201 cctcaaaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||    
T  20219934 cctcaaaattggaattatggaagctgaaaatcggtggccgattt 20219977  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 13056976 - 13057014
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  13056976 aaattggaattctggaagcagaaaattggtggccgattt 13057014  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 15719580 - 15719622
Alignment:
Q  354 aaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    |||||||||||||| ||||| | ||||||||||||||||||||    
T  15719580 aaacgtatttttataggccatatttgttccaattttatgaggg 15719622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 24339001 - 24338963
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  24339001 aaattgaaattctggaagatgaaaatcggtggccgattt 24338963  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 44724356 - 44724395
Alignment:
Q  205 aaaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  44724356 aaaattgaaattctggaagctgaaaatcggtggccgattt 44724395  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 27833159 - 27833128
Alignment:
Q  213 aattctggaagcagaaaatcggtggccgattt 244  Q
    ||||||||||||||||||||||||||||||||    
T  27833159 aattctggaagcagaaaatcggtggccgattt 27833128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 24817729 - 24817687
Alignment:
Q  354 aaacgtatttttatgggccagaattgttccaattttatgaggg 396  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||    
T  24817729 aaacgtatttttattggccagatttgttacaattttatgaggg 24817687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 393
Target Start/End: Complemental strand, 37963304 - 37963269
Alignment:
Q  358 gtatttttatgggccagaattgttccaattttatga 393  Q
    |||||||||||||||||| |||||||||||||||||    
T  37963304 gtatttttatgggccagatttgttccaattttatga 37963269  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 15540008 - 15539970
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  15540008 aaattggaattctggaagcagaaaatcgatggccgattt 15539970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 22163458 - 22163420
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  22163458 aaattggaattctggaagctgaaaatcggtggccgattt 22163420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 26775005 - 26775043
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  26775005 aaattggaattctggtagcagaaaatcggtggccgattt 26775043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 27910973 - 27911007
Alignment:
Q  358 gtatttttatgggccagaattgttccaattttatg 392  Q
    |||||||||||||||||| ||||||||||||||||    
T  27910973 gtatttttatgggccagatttgttccaattttatg 27911007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 27957392 - 27957426
Alignment:
Q  358 gtatttttatgggccagaattgttccaattttatg 392  Q
    |||||||||||||||||| ||||||||||||||||    
T  27957392 gtatttttatgggccagatttgttccaattttatg 27957426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 33541899 - 33541861
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  33541899 aaattggaattctggaagctgaaaatcggtggccgattt 33541861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 1620768 - 1620730
Alignment:
Q  358 gtatttttatgggccagaattgttccaattttatgaggg 396  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  1620768 gtatttttatgggctagatttgttccaattttatgaggg 1620730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 1627213 - 1627175
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  1627213 aaattggaattctggaagctgaaaatcggtggccgattt 1627175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 28137804 - 28137766
Alignment:
Q  206 aaattgaaattctggaagcagaaaatcggtggccgattt 244  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  28137804 aaattggaattctggaagtagaaaatcggtggccgattt 28137766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 1619032 - 1618995
Alignment:
Q  359 tatttttatgggccagaattgttccaattttatgaggg 396  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  1619032 tatttttatgggctagatttgttccaattttatgaggg 1618995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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