View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_12 (Length: 393)
Name: NF14965_low_12
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 5374645 - 5374850
Alignment:
| Q |
16 |
taggtctcaccgtcaattctcagttttcgggttagattcgacaaagacatttgattcaaatacttgtgcacaatatttagtacattcaaattctatattt |
115 |
Q |
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| T |
5374645 |
taggcctcaccgtcaattctcagttttcgggttagattcgacaaagacatttgattcaaatacttgtgcacaatatttagtacattcaaattctatattt |
5374744 |
T |
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| Q |
116 |
attttgttctattatgtgttgcttttaatcaattgaaataaacaacaattttacaaaatatgaagagagtagatagtcaaaatgaaattgataaagcaaa |
215 |
Q |
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| T |
5374745 |
attttgttctattatgtgttgcttttaatcaattgaaataaacaacaattttacaaaatatgaagagagtagatagtcaaaatgaaattgataaagcaaa |
5374844 |
T |
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| Q |
216 |
atcttt |
221 |
Q |
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|||||| |
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| T |
5374845 |
atcttt |
5374850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 372
Target Start/End: Original strand, 5375341 - 5375492
Alignment:
| Q |
219 |
ttttccaattcacagttcttgtttctgacttcttatgttttcnnnnnnnaaggtatggaccttatctaatggaatgctacaaagaaatatatcccagagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5375341 |
ttttccaattcacagttcttgtttctgacttcttatgttttctttttttaaggtatggaccttatctaatggaatgctacaaagaaatatatcccagacg |
5375440 |
T |
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| Q |
319 |
gctatattaaataagcgatcccagagggcttttatgaaataaatctgtaaacag |
372 |
Q |
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| T |
5375441 |
gctatattaaataagctatcccagagggc--ttatgaaataaatctgtaaacag |
5375492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 5392916 - 5393078
Alignment:
| Q |
60 |
agacatttgattcaaatacttgtgcacaatatttagtacattcaaattctatatttattttgttctattatgtgttgcttttaatcaattgaaataaaca |
159 |
Q |
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| T |
5392916 |
agacattttattcaaatacttgtgcacaatatttt-tacattcaaattctatatttattttgttatattatgcattgctttcaatcaattgaaataaaca |
5393014 |
T |
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| Q |
160 |
acaatt-ttacaaaatatgaagagagtagatagtcaaaatgaaattgataaagcaaaatctttt |
222 |
Q |
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| T |
5393015 |
acaattctaaaaaaatatgaagagagtagataatcaaaatgaaattgataaagcaaaatctttt |
5393078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 5370387 - 5370346
Alignment:
| Q |
268 |
aaggtatggaccttatctaatggaatgctacaaagaaatata |
309 |
Q |
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| T |
5370387 |
aaggtatggaccttatctaatggaatgctacaaagaaatata |
5370346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 5354656 - 5354617
Alignment:
| Q |
182 |
gagtagatagtcaaaatgaaattgataaagcaaaatcttt |
221 |
Q |
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| T |
5354656 |
gagtagattgtcaaaatgaaattgataaagcaaaatcttt |
5354617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 5354735 - 5354681
Alignment:
| Q |
39 |
ttttcgggttagattcgacaaagacatttgattcaaatacttgtgcacaatattt |
93 |
Q |
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||||| ||||| |||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
5354735 |
ttttcaggttatattcaacaaaggcatacgattcaaatacttgtgcacaatattt |
5354681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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