View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_16 (Length: 344)
Name: NF14965_low_16
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 36952351 - 36952556
Alignment:
| Q |
24 |
gtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaatacactcacaattcggg |
123 |
Q |
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| T |
36952351 |
gtggacacatccaaaccgttaaaaagctattagcaagttatgctaatattgaacggcatgatataaaaatggcatggttagaatacactaacaatttgg- |
36952449 |
T |
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| Q |
124 |
tactgacctaaatggccatgagtatgatgaaaacatgaatatgttggacttgttaatatttgtgatgaagaagaatgttcaaggcaacactatgttacat |
223 |
Q |
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| T |
36952450 |
--atgacccaa------aagagtatgatgaaaagtcaaatatggaggacttgttagaatttgtgaagatgaagaacgttcaaggtaacactatgttacat |
36952541 |
T |
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| Q |
224 |
gaggcaatgttatgt |
238 |
Q |
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||||||||||||||| |
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| T |
36952542 |
gaggcaatgttatgt |
36952556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 36934873 - 36934971
Alignment:
| Q |
12 |
ttgcagctagacgtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaataca |
110 |
Q |
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| T |
36934873 |
ttgctgctagatatggacacatctcaaccgttgaaaagctattagcaagttatgctaatattgaacggagtgagataaaaatggcatggttagagtaca |
36934971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 36963921 - 36964033
Alignment:
| Q |
182 |
tttgtgatgaagaagaatgttcaaggcaacactatgttacatgaggcaatgttatgtggtgactttaagagaattggcggggatatgattttcaaagttt |
281 |
Q |
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| T |
36963921 |
tttgtgaacaaggagaatgctcaaggaaacactatgttacatgaggcaatgttttgtggtgagattaagagaattggcggggacaagattttcaaagttt |
36964020 |
T |
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| Q |
282 |
gtgaactttacaa |
294 |
Q |
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||||||||||||| |
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| T |
36964021 |
gtgaactttacaa |
36964033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 37071657 - 37071532
Alignment:
| Q |
169 |
ggacttgttaatatttgtgatgaagaagaatgttcaaggcaacactatgttacatgaggcaatgttatgtggtgactttaagagaattggcggggatatg |
268 |
Q |
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||||||||||| |||||||| || |||||||| |||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| | |
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| T |
37071657 |
ggacttgttaaaatttgtgaagatagagaatgttgaaggaaacactatgtttcatgaggcaatgttatgtcgtgacaagaagagaattggcggggataag |
37071558 |
T |
|
| Q |
269 |
attttcaaagtttgtgaactttacaa |
294 |
Q |
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| T |
37071557 |
attttcaaagcttgtgagctctacaa |
37071532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 36946446 - 36946532
Alignment:
| Q |
24 |
gtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaataca |
110 |
Q |
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| T |
36946446 |
gtggacacatctcaaccgttaaaacactattagcaagttatactaatattgaacggcgtgatataaaaatggcatggttagaataca |
36946532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 36963769 - 36963855
Alignment:
| Q |
24 |
gtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaataca |
110 |
Q |
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| T |
36963769 |
gtggacacatctcaaccgttaaaacactattagcaagttatactaatattgaacggcgtgatataaaaatggcatggttagaataca |
36963855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 37081638 - 37081537
Alignment:
| Q |
11 |
attgcagctagacgtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaataca |
110 |
Q |
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||||| || ||| ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||| ||||||| |||||||||||| |||| |
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| T |
37081638 |
attgctgcaagaggtggacacatctcaatcgttgaaaagctattggcagcttatgctaattttgaacggcatgatataaaaacggcatggttagagtaca |
37081539 |
T |
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| Q |
111 |
ct |
112 |
Q |
| |
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|| |
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| T |
37081538 |
ct |
37081537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 37071887 - 37071779
Alignment:
| Q |
11 |
attgcagctagacgtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaataca |
110 |
Q |
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||||| || ||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||| |||| |||| || |||||||||||||||| |
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| T |
37071887 |
attgctgcaagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaacagcatggttagaataca |
37071788 |
T |
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| Q |
111 |
ctcacaatt |
119 |
Q |
| |
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| T |
37071787 |
ctaacaatt |
37071779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 37081470 - 37081382
Alignment:
| Q |
197 |
aatgttcaaggcaacactatgttacatgaggcaatgttatgtggtgactttaagagaattggcggggatatgattttcaaagtttgtga |
285 |
Q |
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|||||| |||| ||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||| |||||| |
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| T |
37081470 |
aatgttgaaggaaacactatgtttcatgaggcaatgttatgtcgtgacaagaagagaattggtggggataagattttcaaagcttgtga |
37081382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 36946598 - 36946713
Alignment:
| Q |
182 |
tttgtgatgaagaagaatgttcaaggcaacactatgttacatgaggcaatgttatgtggtgactttaagagaattggcggggatatgattttcaaagttt |
281 |
Q |
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||||||| ||| |||||| |||||| ||||||||||||||||||||||||||| |||| ||||| | ||| ||| || ||||||||| |||| |
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| T |
36946598 |
tttgtgaacaaggagaatgctcaaggaaacactatgttacatgaggcaatgttacgtgg------caagagcaatggtgggcatgagattttcaatgttt |
36946691 |
T |
|
| Q |
282 |
gtgaactttacaaaactgaaga |
303 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36946692 |
gtgaactttacaaaactgaaga |
36946713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 12495545 - 12495390
Alignment:
| Q |
169 |
ggacttgttaatatttgtgatgaagaagaatgttcaaggcaacactatgttacatgaggcaatgttatgtggtgactttaagagaattggcggggatatg |
268 |
Q |
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| T |
12495545 |
ggacttgttaaattttgtaaaggagaagaatgttcgaggcaacactatgttacatgaggcaatgttaagtg---acaaaagcaatatgagcaggggtatg |
12495449 |
T |
|
| Q |
269 |
attttcaaagtttgtgaactttacaaaactgaagatttatctcgatactcgttggcaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
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| T |
12495448 |
attttcaaagtttgtgaactttacaaaactgaagatttgtctggatactcattggcaaa |
12495390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 12495684 - 12495596
Alignment:
| Q |
24 |
gtggacacatctcaaccgttgaaaagctattggcaagttatgctaatattgaacggagtgagataaaaatggcatggttagaatacact |
112 |
Q |
| |
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|||||||||| |||||||||||||||||| | |||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
12495684 |
gtggacacatttcaaccgttgaaaagctactagcaaattatgtgaatattgaacggcatgatataaaaatggcatggttagaatacact |
12495596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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