View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14965_low_19 (Length: 335)

Name: NF14965_low_19
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14965_low_19
NF14965_low_19
[»] chr1 (1 HSPs)
chr1 (64-196)||(36676037-36676172)
[»] chr8 (4 HSPs)
chr8 (234-335)||(6579297-6579398)
chr8 (234-335)||(27268086-27268187)
chr8 (234-335)||(12664010-12664111)
chr8 (235-335)||(27005048-27005147)
[»] chr4 (4 HSPs)
chr4 (234-335)||(29710944-29711045)
chr4 (234-335)||(1690225-1690329)
chr4 (235-335)||(35536096-35536195)
chr4 (8-66)||(28563906-28563964)
[»] chr6 (1 HSPs)
chr6 (249-330)||(16484252-16484333)
[»] chr5 (1 HSPs)
chr5 (249-330)||(21818577-21818658)
[»] scaffold0194 (1 HSPs)
scaffold0194 (148-181)||(26548-26581)
[»] chr7 (1 HSPs)
chr7 (103-184)||(46922039-46922120)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 36676037 - 36676172
Alignment:
Q  64 gatccaccagcatcatcagatttcacctctc---ctttcctaacaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaa 160  Q
    ||||||||||| ||||||||||||||| |||   ||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  36676037 gatccaccagcttcatcagatttcaccactctttctttcttagcaccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaa 36676136  T
Q  161 ttatagaagcttgatcaccctgcattcaccaacaac 196  Q
    ||||||||||||||||||||||||||||||||||||    
T  36676137 ttatagaagcttgatcaccctgcattcaccaacaac 36676172  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 6579297 - 6579398
Alignment:
Q  234 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 333  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  6579297 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 6579396  T
Q  334 ac 335  Q
    ||    
T  6579397 ac 6579398  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 27268187 - 27268086
Alignment:
Q  234 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 333  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  27268187 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 27268088  T
Q  334 ac 335  Q
    ||    
T  27268087 ac 27268086  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 12664010 - 12664111
Alignment:
Q  234 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 333  Q
    |||||||||||||  |||||| ||||||||||||| |||||||| ||| |||||||| | ||||||||  |||||||||||||||  |||||||||||||    
T  12664010 aggcaaaatccaaagtatatttagaaatgcacatgtagcaaacagaatctgattgaaacgttggttcatgacacaaaacacaatcgaaaaattcacaatc 12664109  T
Q  334 ac 335  Q
    ||    
T  12664110 ac 12664111  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 27005048 - 27005147
Alignment:
Q  235 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 334  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||  ||||||||  |||| |||||||||||||||| |||||||||    
T  27005048 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgttggttcatgacac-aaacacaatcacaaaaatcacaatca 27005146  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 29710944 - 29711045
Alignment:
Q  234 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 333  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  29710944 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 29711043  T
Q  334 ac 335  Q
    ||    
T  29711044 ac 29711045  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 1690329 - 1690225
Alignment:
Q  234 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaa---aacacaatcacaaaattcaca 330  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||| ||||  ||||||   |||| || |||||||||||||    
T  1690329 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttgattcatgacacaaaacaacagaaccacaaaattcaca 1690230  T
Q  331 atcac 335  Q
    |||||    
T  1690229 atcac 1690225  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 35536195 - 35536096
Alignment:
Q  235 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 334  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||   |||||||  |||| |||||||||||||||| |||||||||    
T  35536195 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgatggttcatgacac-aaacacaatcacaaaaatcacaatca 35536097  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28563906 - 28563964
Alignment:
Q  8 acatcatcaacctctccgcaatcttggaagaaattttctctaaaaaatttcagttagat 66  Q
    |||||| ||||||||||||| ||||||||||| |||||||| || ||||||||||||||    
T  28563906 acatcaacaacctctccgcagtcttggaagaacttttctctgaataatttcagttagat 28563964  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 16484333 - 16484252
Alignment:
Q  249 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcaca 330  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  16484333 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcaca 16484252  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 21818577 - 21818658
Alignment:
Q  249 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcaca 330  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  21818577 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcaca 21818658  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
Q  148 atagcccctccaattatagaagcttgatcaccct 181  Q
    ||||||||||||||||||||||||||||||||||    
T  26581 atagcccctccaattatagaagcttgatcaccct 26548  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 46922120 - 46922039
Alignment:
Q  103 acaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgca 184  Q
    ||||||| ||| || | ||| ||||||||||  || |||||||||||||| || ||||| || || ||||||||||||||||    
T  46922120 acaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca 46922039  T

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