View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_2 (Length: 572)
Name: NF14965_low_2
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 4 - 572
Target Start/End: Original strand, 630135 - 630721
Alignment:
| Q |
4 |
cgccgccgccgtcctacaggttcctgccgtccaacatgtctcaaccattctgaaaaccaccatttt----------------tctcattccctgcatttt |
87 |
Q |
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| T |
630135 |
cgccgccgccgtcctacaggttcatgtcgtccaacatgtctcaaccattctgaaaaccaccatttttctcattcctattttttctcattccctgcatttt |
630234 |
T |
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| Q |
88 |
cggatcgcaatggaaaccaccaccgcaataacaaccacaaccaccaaaggtgccggtggaataaaaggcggcaaagggaagaaagccgtttcaaagtcct |
187 |
Q |
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| T |
630235 |
cggatcgcaatggaaaccaccgccgcaataacaaccacaaccaccaaaggtgtcggtggaataaaaggcggcaaagggaagaaagccgtttcaaagtcct |
630334 |
T |
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| Q |
188 |
ccaaagtcggtcttcaattccccattggtcgtatcgcgaggttcatgaagaaaggacactattctcaacgtattggcactggtgctccgatctacctcgc |
287 |
Q |
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| T |
630335 |
ccaaagtcggtcttcaattccccattggtcgtatcgcgaggttcatgaagaaaggacactattctcagcgtattggcactggtgctccgatctacctcgc |
630434 |
T |
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| Q |
288 |
cgaggttcttgaattggctgggaatgttgcaagagataacaagaagaacagaattaacccccctagacacgtgtgtcttgctgcgaggaacgttgatgaa |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
630435 |
cgaggttcttgaattggctgggaatgttgcaagagataacaagaagaacataattaacccccctagacacgtgtgtcttgctgcgaggaacgttgatgaa |
630534 |
T |
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| Q |
388 |
ttaggaaaattgcttcaaggtgtggcaattgctggtggtggagttttgccaaatattaacc--gtgttgttgccaaagaaaaatggttctgctgctactg |
485 |
Q |
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| T |
630535 |
ttaggaaaattgcttcaaggtgtggcaattgctagtggtggagttttgccaaatattaaccctgtgttgttgccaaagaaaaatggttctgctgctactg |
630634 |
T |
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| Q |
486 |
agaaatctactaagtcccctaagaaatagatttttcaattgtataatcttacttttaatgtaatttgtttttcattttcatttagac |
572 |
Q |
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| T |
630635 |
agaaatctactaagtcccctaagaaatagatttttcaattgtataatcttacttttaatgtaatttgtttttcattttcatttagac |
630721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 290 - 534
Target Start/End: Original strand, 46584524 - 46584761
Alignment:
| Q |
290 |
aggttcttgaattggctgggaatgttgcaagagataacaagaagaacagaattaacccccctagacacgtgtgtcttgctgcgaggaacgttgatgaatt |
389 |
Q |
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| T |
46584524 |
aggttcttgaattggctgggaatgctgcaagagataacaagaagaacagaattaaccc---tagacacgtgtgtcttgctgtgaggaacgatgatgaatt |
46584620 |
T |
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| Q |
390 |
aggaaaattgcttcaaggtgtggcaattgctggtggtggagttttgccaaatattaacc--gtgttgttgccaaagaaaaatggttctgctgctactgag |
487 |
Q |
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| T |
46584621 |
aggaaaattgcttcaaggtgtgacaattgctagtggtggagttttgccaaatataaaccctgtgttgttgccaaagaaaa------ccgctgctgctgag |
46584714 |
T |
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| Q |
488 |
aaatctactaagtcccctaagaaatagatttttcaattgtataatct |
534 |
Q |
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| T |
46584715 |
aaaactaccaattcccctaagaaatagatttgtcaattgtataatct |
46584761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 95 - 289
Target Start/End: Original strand, 46584206 - 46584400
Alignment:
| Q |
95 |
caatggaaaccaccaccgcaataacaaccacaaccaccaaaggtgccggtggaataaaaggcggcaaagggaagaaagccgtttcaaagtcctccaaagt |
194 |
Q |
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| T |
46584206 |
caatggattccaccaccaccacaacaaccacaaccaccaaaggtgccggtggaagaaaaggcggcgaaaggaagaaagccgtttcaaaatcctccaaagc |
46584305 |
T |
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| Q |
195 |
cggtcttcaattccccattggtcgtatcgcgaggttcatgaagaaaggacactattctcaacgtattggcactggtgctccgatctacctcgccg |
289 |
Q |
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| T |
46584306 |
cggtctccaattccccgttggtcgtatcgctaggttcatgaagaaaggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccg |
46584400 |
T |
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