View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_24 (Length: 300)
Name: NF14965_low_24
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 50275904 - 50275622
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
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| T |
50275904 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
50275805 |
T |
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| Q |
101 |
ttttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcggtt |
200 |
Q |
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| T |
50275804 |
ttttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcgatt |
50275705 |
T |
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| Q |
201 |
acatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
279 |
Q |
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| T |
50275704 |
acatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
50275622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 50279928 - 50279646
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
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| T |
50279928 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
50279829 |
T |
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| Q |
101 |
ttttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcggtt |
200 |
Q |
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| T |
50279828 |
ttttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcgatt |
50279729 |
T |
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| Q |
201 |
acatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
279 |
Q |
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| T |
50279728 |
acatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
50279646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14462579 - 14462668
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
90 |
Q |
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| T |
14462579 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
14462668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 22610185 - 22610283
Alignment:
| Q |
2 |
ctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
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| T |
22610185 |
ctgatgtatttcacatgctctatgggttgtggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctgaaattctcaaggtga |
22610283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 14931420 - 14931491
Alignment:
| Q |
29 |
tgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
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| T |
14931420 |
tgtggaaaacacctgctgaaaggtgtttcttatggcttggtggttttcggtcgtctgaacttctcaaggtga |
14931491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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