View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_26 (Length: 270)
Name: NF14965_low_26
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 29098579 - 29098812
Alignment:
| Q |
18 |
atggtcaaatgatggtgcataaactgatccatggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagctccccttctg |
117 |
Q |
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| T |
29098579 |
atggtcaaatgatggtgcataaactgatccatggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagctccccttctg |
29098678 |
T |
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| Q |
118 |
gcatttgcttcctcaggattcttcatagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacct |
217 |
Q |
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| T |
29098679 |
gcatgtgcttcctcgggattcttcatagcatctagttcagaacgataaagatgaaaaccatccatgcgaatcacaatagcaacatcaggaggttgaacct |
29098778 |
T |
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| Q |
218 |
gagagtcaaaggaagaagctttctctggccaaag |
251 |
Q |
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| T |
29098779 |
gagagtcaaaggaagaagttttctctggccaaag |
29098812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 38537783 - 38537896
Alignment:
| Q |
138 |
cttcatagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtcaaaggaagaagct |
237 |
Q |
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| T |
38537783 |
cttcaaagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtcaaaggaagaagct |
38537882 |
T |
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| Q |
238 |
ttctctggccaaag |
251 |
Q |
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| T |
38537883 |
ttctctggccaaag |
38537896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 38537197 - 38537258
Alignment:
| Q |
47 |
catggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagct |
108 |
Q |
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| T |
38537197 |
catgaactctcagattcttgagacaggtaagcagtcgcgtaggattgaatgtccatggagct |
38537258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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