View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_31 (Length: 240)
Name: NF14965_low_31
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 24561697 - 24561483
Alignment:
| Q |
10 |
gatgaagagactaccattggtttaagagatatcctattgaaagcatttgaactgcatcaccatttgatatttgagaatcaaaatccgtaattggttaccc |
109 |
Q |
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| T |
24561697 |
gatgaagagactaccattggtttaagagatatcctattgaaagcatttgaactgcatcaccatttgatatttgagaatcaaaatccgcaattggttaccc |
24561598 |
T |
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| Q |
110 |
ttaaaatctttattgtagttgcttcatgaataagcaactcatgtatttgatttggagtattattgtgcagtcttgcttttcattgaggttgttttgttgt |
209 |
Q |
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| T |
24561597 |
ttaaaatctttattgtagttgcttcatgaataagcaactcatgtatttgatttggagtattattgtgcagtcttgcttttcattgaggttgttttgttgt |
24561498 |
T |
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| Q |
210 |
ggccgataaaggaag |
224 |
Q |
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| T |
24561497 |
ggccgataaaggaag |
24561483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 37223647 - 37223814
Alignment:
| Q |
53 |
catttgaactgcatcaccatttgatatttgagaatcaaaatccgtaattggttacccttaaaatctttattgtagttgcttcatgaataagcaactcatg |
152 |
Q |
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| T |
37223647 |
catttgaactatgtcaccatttgatatttgagaatcaaaatccacaattggttacctttaaaatctttattgttgttgcttcataaataagcaacttatg |
37223746 |
T |
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| Q |
153 |
tatttgatttggagtattattgtgcagtcttgcttttcattgaggttgttttgttgtggccgataaag |
220 |
Q |
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| T |
37223747 |
tatttgatttggagtattattgtgcagtcttgctcttcattgacattgttttgttatggccaataaag |
37223814 |
T |
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