View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14965_low_34 (Length: 226)

Name: NF14965_low_34
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14965_low_34
NF14965_low_34
[»] chr5 (22 HSPs)
chr5 (2-226)||(12340089-12340313)
chr5 (127-226)||(17382110-17382210)
chr5 (141-226)||(24517309-24517394)
chr5 (141-226)||(30072133-30072218)
chr5 (127-226)||(17027467-17027567)
chr5 (142-226)||(25594767-25594851)
chr5 (126-202)||(22229748-22229825)
chr5 (126-226)||(24841692-24841793)
chr5 (130-210)||(25075328-25075408)
chr5 (130-210)||(25133297-25133377)
chr5 (153-226)||(18222460-18222533)
chr5 (153-224)||(11274408-11274479)
chr5 (136-195)||(22754898-22754957)
chr5 (131-226)||(22967917-22968013)
chr5 (117-226)||(15205575-15205683)
chr5 (149-226)||(16634008-16634086)
chr5 (149-226)||(16622742-16622818)
chr5 (130-213)||(26070418-26070501)
chr5 (159-216)||(26330153-26330210)
chr5 (127-226)||(25680536-25680636)
chr5 (25-61)||(20520771-20520807)
chr5 (153-221)||(23157868-23157936)
[»] chr2 (18 HSPs)
chr2 (126-226)||(35707742-35707843)
chr2 (127-221)||(21505219-21505314)
chr2 (128-226)||(1733042-1733140)
chr2 (126-226)||(25473976-25474077)
chr2 (142-226)||(32619598-32619682)
chr2 (126-220)||(28278504-28278598)
chr2 (165-226)||(30998750-30998811)
chr2 (123-220)||(16593833-16593938)
chr2 (127-226)||(18236377-18236477)
chr2 (131-226)||(19949629-19949725)
chr2 (149-189)||(31914045-31914085)
chr2 (164-218)||(21844712-21844766)
chr2 (128-218)||(21843085-21843176)
chr2 (133-218)||(24047328-24047414)
chr2 (151-209)||(30705202-30705260)
chr2 (142-220)||(32276594-32276672)
chr2 (188-221)||(15829136-15829169)
chr2 (153-218)||(31261966-31262031)
[»] chr8 (23 HSPs)
chr8 (130-226)||(13082012-13082109)
chr8 (129-221)||(12956431-12956524)
chr8 (126-214)||(16054233-16054322)
chr8 (127-220)||(16052358-16052452)
chr8 (149-226)||(14977182-14977259)
chr8 (149-221)||(24120194-24120266)
chr8 (127-226)||(28901415-28901515)
chr8 (126-216)||(29047401-29047492)
chr8 (134-226)||(6358645-6358738)
chr8 (126-226)||(11310279-11310380)
chr8 (126-221)||(22894610-22894710)
chr8 (142-226)||(32239243-32239327)
chr8 (125-226)||(28902027-28902129)
chr8 (126-218)||(26882347-26882440)
chr8 (127-214)||(28252468-28252556)
chr8 (20-73)||(11197900-11197953)
chr8 (127-226)||(13530180-13530280)
chr8 (127-226)||(13619719-13619819)
chr8 (151-190)||(41505648-41505687)
chr8 (149-186)||(30543726-30543763)
chr8 (149-221)||(10866951-10867023)
chr8 (127-190)||(12774954-12775018)
chr8 (153-221)||(31436446-31436514)
[»] chr3 (19 HSPs)
chr3 (128-221)||(12573231-12573325)
chr3 (128-221)||(13549695-13549789)
chr3 (128-221)||(1475360-1475454)
chr3 (127-226)||(25919539-25919639)
chr3 (149-226)||(33914637-33914714)
chr3 (126-226)||(21017815-21017917)
chr3 (126-226)||(11521079-11521180)
chr3 (151-221)||(19219291-19219361)
chr3 (153-224)||(10303427-10303498)
chr3 (117-226)||(25883033-25883143)
chr3 (149-226)||(13911228-13911305)
chr3 (153-217)||(10341763-10341827)
chr3 (126-226)||(8402625-8402726)
chr3 (127-220)||(12409399-12409492)
chr3 (149-226)||(16970203-16970280)
chr3 (127-214)||(17637043-17637131)
chr3 (130-219)||(25188701-25188791)
chr3 (168-225)||(26387920-26387977)
chr3 (117-169)||(4776123-4776175)
[»] chr7 (23 HSPs)
chr7 (123-226)||(22067881-22067985)
chr7 (127-226)||(29544459-29544559)
chr7 (131-226)||(7815267-7815363)
chr7 (126-226)||(20446178-20446279)
chr7 (126-214)||(21471736-21471825)
chr7 (116-220)||(315114-315219)
chr7 (126-218)||(7142037-7142130)
chr7 (142-226)||(20470885-20470969)
chr7 (149-226)||(23124864-23124940)
chr7 (174-221)||(1255293-1255340)
chr7 (153-220)||(9385455-9385522)
chr7 (127-221)||(18496505-18496600)
chr7 (116-185)||(4092601-4092671)
chr7 (126-209)||(2632528-2632612)
chr7 (126-170)||(9761537-9761581)
chr7 (126-170)||(9801996-9802040)
chr7 (157-214)||(9066103-9066160)
chr7 (149-226)||(21545874-21545950)
chr7 (154-226)||(7494679-7494751)
chr7 (25-72)||(23196435-23196482)
chr7 (127-184)||(2353357-2353415)
chr7 (142-190)||(19140085-19140133)
chr7 (142-190)||(20739484-20739532)
[»] chr1 (20 HSPs)
chr1 (126-226)||(8247732-8247833)
chr1 (128-216)||(21451900-21451989)
chr1 (126-226)||(12423989-12424090)
chr1 (123-218)||(11770077-11770173)
chr1 (142-226)||(25266420-25266503)
chr1 (142-226)||(23223367-23223451)
chr1 (149-221)||(26657439-26657511)
chr1 (142-226)||(50047137-50047221)
chr1 (126-226)||(30675422-30675524)
chr1 (149-226)||(12810285-12810362)
chr1 (128-226)||(23519830-23519930)
chr1 (126-209)||(30781699-30781783)
chr1 (154-221)||(25730651-25730718)
chr1 (149-221)||(18301083-18301157)
chr1 (163-226)||(24903370-24903433)
chr1 (146-220)||(34381668-34381742)
chr1 (150-226)||(18391046-18391122)
chr1 (149-200)||(25777932-25777983)
chr1 (127-221)||(26101997-26102092)
chr1 (182-226)||(25494554-25494598)
[»] chr6 (16 HSPs)
chr6 (127-226)||(30355266-30355366)
chr6 (130-214)||(15574868-15574953)
chr6 (131-226)||(13759526-13759622)
chr6 (127-209)||(15576254-15576337)
chr6 (123-226)||(14924492-14924596)
chr6 (130-221)||(15998454-15998546)
chr6 (126-221)||(16527835-16527925)
chr6 (129-226)||(17860523-17860617)
chr6 (149-221)||(16387328-16387400)
chr6 (149-219)||(26512859-26512929)
chr6 (149-219)||(26517975-26518045)
chr6 (149-226)||(20495868-20495945)
chr6 (146-190)||(1755663-1755707)
chr6 (142-214)||(12972471-12972543)
chr6 (163-219)||(32930554-32930610)
chr6 (168-224)||(22262332-22262388)
[»] chr4 (20 HSPs)
chr4 (127-226)||(25315306-25315406)
chr4 (128-226)||(1676370-1676469)
chr4 (128-226)||(1682898-1682997)
chr4 (126-226)||(9783058-9783159)
chr4 (142-221)||(34864371-34864450)
chr4 (149-226)||(5906795-5906872)
chr4 (126-226)||(12111407-12111506)
chr4 (126-196)||(15192142-15192213)
chr4 (128-226)||(27302719-27302818)
chr4 (130-218)||(18897934-18898023)
chr4 (142-221)||(25050145-25050224)
chr4 (123-218)||(1696652-1696746)
chr4 (126-226)||(4953621-4953722)
chr4 (16-72)||(39120842-39120898)
chr4 (152-225)||(21077199-21077272)
chr4 (123-226)||(10320294-10320398)
chr4 (123-226)||(22119582-22119686)
chr4 (142-226)||(31859955-31860039)
chr4 (163-211)||(5125581-5125629)
chr4 (149-218)||(46647159-46647228)
[»] scaffold0171 (2 HSPs)
scaffold0171 (128-226)||(6137-6236)
scaffold0171 (127-191)||(21337-21402)
[»] scaffold0002 (1 HSPs)
scaffold0002 (126-197)||(446944-447016)
[»] scaffold0386 (2 HSPs)
scaffold0386 (142-219)||(13153-13230)
scaffold0386 (130-217)||(8793-8881)
[»] scaffold0188 (1 HSPs)
scaffold0188 (128-191)||(27064-27128)
[»] scaffold0282 (1 HSPs)
scaffold0282 (142-185)||(22661-22704)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 12340313 - 12340089
Alignment:
Q  2 atgtttgtcaaattttcccaaacttccttacctatgttgaaactacaatattgaatattgataagg-aaaaatagtggaggcatggacggaccgtgtctt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||  |||||||| ||||||||||||    
T  12340313 atgtttgtcaaattttcccaaactttcttacctatgttgaaactacaatattgattattgttaaggaaaaaatagtgagggcatggaaggaccgtgtctt 12340214  T
Q  101 acatcttggttacagaattgacgatagagcatcatatgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttag 200  Q
     |||||| ||| ||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  12340213 gcatcttcgttgcagaactgacgacagagcatcatatgacattttggctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttag 12340115  T
Q  201 agaagttgtcaatggtttgagaaaca 226  Q
    || |||||||||||||||||| ||||    
T  12340114 aggagttgtcaatggtttgaggaaca 12340089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 17382210 - 17382110
Alignment:
Q  127 gagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| |||||  | ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaac 17382111  T
Q  226 a 226  Q
    |    
T  17382110 a 17382110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 24517309 - 24517394
Alignment:
Q  141 attttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  24517309 attttagttatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 24517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 30072133 - 30072218
Alignment:
Q  141 attttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  30072133 attttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 17027467 - 17027567
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||||||  || ||||| |||||||| |||    
T  17027467 gagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaac 17027566  T
Q  226 a 226  Q
    |    
T  17027567 a 17027567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 25594851 - 25594767
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||    
T  25594851 ttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaaca 25594767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 22229748 - 22229825
Alignment:
Q  126 agagcatcatatgacattttggttatgtttt-tagtacttttctttgcatttgaagacaaataagatgagagttagag 202  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  22229748 agagcatcatatgtcattttggctatgttttttagtacttttctttgcatttgaagacaaataagatgagagatagag 22229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 24841692 - 24841793
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    ||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||||| | |||| ||||| |||| ||||||||||||| ||    
T  24841692 agagcatcatatgacattttttgctatgtttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaa 24841791  T
Q  225 ca 226  Q
    ||    
T  24841792 ca 24841793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 25075408 - 25075328
Alignment:
Q  130 catcatatgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtc 210  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||||||||| |||||||    
T  25075408 catcatattacattttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 25133377 - 25133297
Alignment:
Q  130 catcatatgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtc 210  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||||||||| |||||||    
T  25133377 catcatattacattttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 18222460 - 18222533
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  18222460 tttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaaca 18222533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 11274479 - 11274408
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| ||||  |||||||||||||||||||||    
T  11274479 tttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgagaaa 11274408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 22754898 - 22754957
Alignment:
Q  136 atgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgaga 195  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  22754898 atgacattttggatatgtttttagtacgtttctttgcatttaaagacaaataagatgaga 22754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 22968013 - 22967917
Alignment:
Q  131 atcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||| ||||| || ||||||||||||| |||||||||||| | |||||||||||||||    |||||| |||||| ||||||||||| ||||    
T  22968013 atcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttgaggaaca 22967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 15205575 - 15205683
Alignment:
Q  117 attgacgatagagcatcatatgacattttggttatgtttttagta-cttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatgg 215  Q
    ||||| || |||||||||||||| ||||||  |||||||||||||  |||| ||||||||| || |||||||||||  |||||| || |||||||| |||    
T  15205575 attgatgacagagcatcatatgatattttgactatgtttttagtattttttatttgcatttaaatacaaataagat--gagttaaaggagttgtcagtgg 15205672  T
Q  216 tttgagaaaca 226  Q
    |||||| ||||    
T  15205673 tttgaggaaca 15205683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 16634008 - 16634086
Alignment:
Q  149 tatgtttttagtacttttctttg-catttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||| |||  | ||| |||| |||||||||||||||| ||  |||||||||||||||||||||||    
T  16634008 tatgtttttagtactttttttttacgtttaaagaaaaataagatgagagttggatgagttgtcaatggtttgagaaaca 16634086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 16622818 - 16622742
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||| |||| ||| |||||||||||||||| ||  ||||||| || |||||||||||||||||| ||||    
T  16622818 tatgtttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaaca 16622742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 26070418 - 26070501
Alignment:
Q  130 catcatatgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaat 213  Q
    ||||||||||  |||||| ||||||||||||  |||||||||||||| ||| ||||||||| |  | |||||| ||||||||||    
T  26070418 catcatatgattttttggctatgtttttagttattttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaat 26070501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 26330210 - 26330153
Alignment:
Q  159 gtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggt 216  Q
    |||||||||||||||||  |||||||||||| |||||| | ||| |||||||||||||    
T  26330210 gtacttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggt 26330153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 25680536 - 25680636
Alignment:
Q  127 gagcatcatatgacattttggttatgt-ttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    |||||||||| |||||||| | ||||| |||||||| ||||||||  |  |||||||||| |||||||||||||  | | || ||||||||||||| |||    
T  25680536 gagcatcatacgacattttagctatgtcttttagtaattttctttaaacctgaagacaaaaaagatgagagttattggatttttcaatggtttgaggaac 25680635  T
Q  226 a 226  Q
    |    
T  25680636 a 25680636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 20520807 - 20520771
Alignment:
Q  25 ttccttacctatgttgaaactacaatattgaatattg 61  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  20520807 ttccttacctatgttgaaagtaccatattgaatattg 20520771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 23157936 - 23157868
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||  ||||||||||||||||||  |||| ||| |  | |||||| ||||||||||||||||||    
T  23157936 tttttagttattttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgag 23157868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 35707742 - 35707843
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35707742 agagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 35707841  T
Q  225 ca 226  Q
    ||    
T  35707842 ca 35707843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 21505314 - 21505219
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21505314 gagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgag 21505219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 1733042 - 1733140
Alignment:
Q  128 agcatcatatgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||  ||||||||||    
T  1733042 agcatcatatgacattttagttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaaca 1733140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 25473976 - 25474077
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||    
T  25473976 agagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgtttgaggaa 25474075  T
Q  225 ca 226  Q
    ||    
T  25474076 ca 25474077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 32619598 - 32619682
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||| ||||||| ||| ||||    
T  32619598 ttttggctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaaca 32619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 28278598 - 28278504
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttga 220  Q
    |||||||||||||| |||||  | |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| | || ||||||||||||    
T  28278598 agagcatcatatgatattttttgctatgtttt-agtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttga 28278504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 30998750 - 30998811
Alignment:
Q  165 ttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaaca 30998811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 16593938 - 16593833
Alignment:
Q  123 gatagagcatcatatgacattttggttatgtttttagtacttttcttt--------gcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    |||| |||||||||||| ||||||| ||||||||||||| |||| |||        ||||||||||||||||||||| ||||||| || |||||||||||    
T  16593938 gataaagcatcatatgatattttggctatgtttttagtatttttttttttttttttgcatttgaagacaaataagattagagttataggagttgtcaatg 16593839  T
Q  215 gtttga 220  Q
    ||||||    
T  16593838 gtttga 16593833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 18236477 - 18236377
Alignment:
Q  127 gagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| |||||  | ||||||||||||  |||||||||||||||||| |||| ||  ||  | ||| |||||||||||||||||||||||||    
T  18236477 gagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggtttgagaaac 18236378  T
Q  226 a 226  Q
    |    
T  18236377 a 18236377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 19949725 - 19949629
Alignment:
Q  131 atcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||| |||||   |||||||||||||| ||||||||| ||||||||| |||||| ||||||| | ||| |||||| ||| ||||||| ||||    
T  19949725 atcatatgatattttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaaca 19949629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 31914085 - 31914045
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataag 189  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31914085 tatgtttttagtatttttctttgcatttgaagacaaataag 31914045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 21844766 - 21844712
Alignment:
Q  164 tttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||||||||||||||||||||||||| ||  | |||||| |||||||||||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttt 21844712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 21843176 - 21843085
Alignment:
Q  128 agcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||||||||||| ||||| ||| |  |||||| ||  |||||||||||||||||||||||||| ||  | |||||| ||||| |||||||||    
T  21843176 agcatcatatgatattttaggtaaattttttattagatttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttt 21843085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 24047328 - 24047414
Alignment:
Q  133 catatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    ||||||| ||||| || ||||||||||||  |||| |||||||||||||  |||||||| |  | |||||||| |||||||||||||    
T  24047328 catatgatattttaggctatgtttttagttattttatttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggttt 24047414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 30705202 - 30705260
Alignment:
Q  151 tgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgt 209  Q
    ||||||||||  |||||||||| |||||||||||||||||||  | |||||| ||||||    
T  30705202 tgtttttagttattttctttgcctttgaagacaaataagatgtcatttagaggagttgt 30705260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 32276672 - 32276594
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttga 220  Q
    |||||| ||||||||||||  ||||||||||||||||||  |||||||| |  | ||| || || ||||||||||||||    
T  32276672 ttttggatatgtttttagttattttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttga 32276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 15829136 - 15829169
Alignment:
Q  188 agatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||||| ||||||||||||||||||    
T  15829136 agatgagagttagaggagttgtcaatggtttgag 15829169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 31261966 - 31262031
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    ||||||||  ||||||||||||| |||| |||| ||||||  | |||||| |||||||||||||||    
T  31261966 tttttagtgtttttctttgcattagaaggcaaacaagatgtcatttagaggagttgtcaatggttt 31262031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 13082109 - 13082012
Alignment:
Q  130 catcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13082109 catcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaaca 13082012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 12956431 - 12956524
Alignment:
Q  129 gcatcatatgacattttggt-tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  12956431 gcatcatgtgatatttttgtctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgag 12956524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 16054233 - 16054322
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  16054233 agagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatg 16054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 16052452 - 16052358
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttga 220  Q
    ||||||||||||| ||||| || |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  16052452 gagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 14977259 - 14977182
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  14977259 tatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaaca 14977182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 24120194 - 24120266
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  24120194 tatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgag 24120266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 28901515 - 28901415
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| ||||| || |||| ||||| |||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||| |||    
T  28901515 gagcatcatatgaaatttttggctatgcttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaac 28901416  T
Q  226 a 226  Q
    |    
T  28901415 a 28901415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 29047492 - 29047401
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggt 216  Q
    |||||||||||||| | ||||| ||| || ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  29047492 agagcatcatatgataatttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt 29047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 6358645 - 6358738
Alignment:
Q  134 atatgacattttggt-tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||| ||||| |||||| ||||| |||||| ||||||||| ||||||    
T  6358645 atatgacattttgggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaaca 6358738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 11310380 - 11310279
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||| |||||  | |||||||||||||||| |||||||||||||||| ||||||| |||||| |||| || ||||||||||||| |||||    
T  11310380 agagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaataagttgagagatagaaaaattgtcaatggtttaagaaa 11310281  T
Q  225 ca 226  Q
    ||    
T  11310280 ca 11310279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 22894710 - 22894610
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagag----aagttgtcaatggtttga 220  Q
    ||||||||||||||||||||  | ||||||||||||||||||||| |||||||||| |||||||| |||||| |||||    ||||||||||||||||||    
T  22894710 agagcatcatatgacatttttaggtatgtttttagtacttttcttcgcatttgaagccaaataagttgagagatagagaactaagttgtcaatggtttga 22894611  T
Q  221 g 221  Q
    |    
T  22894610 g 22894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 32239243 - 32239327
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| ||||||||||| |||||||||| |||||||||| | ||||||| | | |||||| |||||||||||||||||| ||||    
T  32239243 ttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaaca 32239327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 28902027 - 28902129
Alignment:
Q  125 tagagcatcatatgacattttggttatgtttt-tagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaa 223  Q
    ||||||||||||||| |||| || |||||||| |||||||||| |||||||||  || ||| |||||||| || ||||| |||| | |||||||||||||    
T  28902027 tagagcatcatatgaaatttcggctatgttttttagtacttttatttgcatttataggcaagtaagatgatagatagaggagttattaatggtttgagaa 28902126  T
Q  224 aca 226  Q
    |||    
T  28902127 aca 28902129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 26882347 - 26882440
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||| |||||||||||| |||| |||||||||||||| ||||||| ||| | |||||||||||| |||||| ||| || ||||| |||||||||    
T  26882347 agagtatcatatgacatcttggctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggttt 26882440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 28252556 - 28252468
Alignment:
Q  127 gagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    ||||||||||||| |||||  |||||||||||| ||||||| || | |||| ||||||||||||||||||||||||  || ||||||||    
T  28252556 gagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttagaagagatgtcaatg 28252468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 11197900 - 11197953
Alignment:
Q  20 caaacttccttacctatgttgaaactacaatattgaatattgataaggaaaaat 73  Q
    |||| ||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  11197900 caaatttccttaactatgttgaaactacaatattgaacattgttaaggaaaaat 11197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 13530280 - 13530180
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    |||||||||||||  |||| || ||||||||||||  | ||||||||| |||||||||||||||| |  | |||||| || |||| |||||||||| |||    
T  13530280 gagcatcatatgatgttttaggctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaac 13530181  T
Q  226 a 226  Q
    |    
T  13530180 a 13530180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 13619819 - 13619719
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    |||||||||||||  |||| || ||||||||||||  | ||||||||| |||||||||||||||| |  | |||||| || |||| |||||||||| |||    
T  13619819 gagcatcatatgatgttttaggctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaac 13619720  T
Q  226 a 226  Q
    |    
T  13619719 a 13619719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 41505687 - 41505648
Alignment:
Q  151 tgtttttagtacttttctttgcatttgaagacaaataaga 190  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  41505687 tgtttttagttattttctttgcatttgaagacaaataaga 41505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 30543726 - 30543763
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaat 186  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  30543726 tatgtttttagtatttttttttgcatttgaagacaaat 30543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 10866951 - 10867023
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||| |||||||  ||||||||| ||| |||| ||||||||| |  | |||||| ||||||||||||||||||    
T  10866951 tatgattttagttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtttgag 10867023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 12775018 - 12774954
Alignment:
Q  127 gagcatcatatgaca-ttttggttatgtttttagtacttttctttgcatttgaagacaaataaga 190  Q
    ||||||||||||| | |||||| | ||||||||||  |||| || ||||||||||||||||||||    
T  12775018 gagcatcatatgatacttttggctttgtttttagttatttttttagcatttgaagacaaataaga 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 31436446 - 31436514
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||  |||| | ||||||||||| |||||||||||  | |||||| ||||||||||| ||||||    
T  31436446 tttttagttattttatctgcatttgaaggcaaataagatgtaatttagaggagttgtcaatgatttgag 31436514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 12573231 - 12573325
Alignment:
Q  128 agcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||  | ||||||||||||||||    
T  12573231 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgag 12573325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 13549695 - 13549789
Alignment:
Q  128 agcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||  | ||||||||||||||||    
T  13549695 agcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgag 13549789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 1475454 - 1475360
Alignment:
Q  128 agcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||| |||||||||||||    
T  1475454 agcatcatatgacattttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgag 1475360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 25919639 - 25919539
Alignment:
Q  127 gagcatcatatgacattt-tggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  | |||||||||||||||| |||    
T  25919639 gagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaac 25919540  T
Q  226 a 226  Q
    |    
T  25919539 a 25919539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 33914714 - 33914637
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||||| ||||    
T  33914714 tatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaaca 33914637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 21017815 - 21017917
Alignment:
Q  126 agagcatcatatgacattttg--gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaa 223  Q
    |||||||||||||| |||||   ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||  |||||| |    
T  21017815 agagcatcatatgatatttttttgttatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgagga 21017914  T
Q  224 aca 226  Q
    |||    
T  21017915 aca 21017917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 11521079 - 11521180
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||| ||||||||| |||  ||||| ||||||| | ||||||||||||| |||||||||||| ||| ||| |||||||||||||||||| ||    
T  11521079 agagcatcatattacattttggctataattttaatactttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaa 11521178  T
Q  225 ca 226  Q
    ||    
T  11521179 ca 11521180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 19219361 - 19219291
Alignment:
Q  151 tgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||  | ||||||||||||||||||    
T  19219361 tgtttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggtttgag 19219291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 10303427 - 10303498
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||||| | ||||||||  ||||||||||| || |||||| |||||||||||||||||||||    
T  10303427 tttttagtacttttctctacatttgaaatcaaataagatgtgaattagaggagttgtcaatggtttgagaaa 10303498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 25883033 - 25883143
Alignment:
Q  117 attgacgatagagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatgg 215  Q
    ||||| || |||||||||||||| | ||||| ||| ||| |||||||||| | ||||||||||||| ||||||||||||||| |||  ||||||||||      
T  25883033 attgatgacagagcatcatatgatactttggctatatttctagtactttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattt 25883132  T
Q  216 tttgagaaaca 226  Q
    |||||| ||||    
T  25883133 tttgaggaaca 25883143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 13911228 - 13911305
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||| ||||||||| |||||||||||| ||||  ||||| ||||  |||||||||||||||||| ||||    
T  13911228 tatgtttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaaca 13911305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 10341763 - 10341827
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtt 217  Q
    |||||||||||||||| ||||||||||  ||||||||||| || |||||| ||||||||||||||    
T  10341763 tttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatggtt 10341827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 8402726 - 8402625
Alignment:
Q  126 agagcatcatatgacattttggt-tatgttttta-gtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaa 223  Q
    |||||||||||||| ||||| |  |||||||||| ||| ||| |||||||||||||| |||||||||||  | |||||| |||||||||||||||||| |    
T  8402726 agagcatcatatgatattttagactatgtttttatgta-tttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgagga 8402628  T
Q  224 aca 226  Q
    |||    
T  8402627 aca 8402625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 12409399 - 12409492
Alignment:
Q  127 gagcatcatatgacattttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttga 220  Q
    |||||||| |||||||||||  ||| |||||||||||||| |||| ||||||||| ||||||  || ||| || |  |||||||||||||||||    
T  12409399 gagcatcacatgacattttgactatatttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttga 12409492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 16970203 - 16970280
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||| |||||||||| ||||||| ||||||||| ||||||||| |  ||||||| |||||| ||| ||||    
T  16970203 tatgtttttagtgcttttctttgtatttgaacacaaataagttgagagttatatgagttgtcgatggttcgaggaaca 16970280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 17637043 - 17637131
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    ||||||||||||||||||| || ||||||| || |||||||||||| | || |||||||||||||| ||| | |||| |||||| ||||    
T  17637043 gagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagataagaataagaggagttgtaaatg 17637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 25188701 - 25188791
Alignment:
Q  130 catcatatgacattttggttatgtttttagt-acttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttg 219  Q
    |||||||||| |||| || ||| |||||| | | |||||||||||||||||||||||||||| |  | |||||| | ||| ||||||||||    
T  25188701 catcatatgatatttaggctatatttttacttatttttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggtttg 25188791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 26387977 - 26387920
Alignment:
Q  168 tttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| ||||| ||| |  | |||||| ||||||||||||||||||||||    
T  26387977 tttgcatttgaaggcaaattagaagtaaattagagtagttgtcaatggtttgagaaac 26387920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 4776175 - 4776123
Alignment:
Q  117 attgacgatagagcatcatatgacattttggttatgtttttagtacttttctt 169  Q
    ||||| ||||||||||||||||| |||||| ||||| |||||||  |||||||    
T  4776175 attgatgatagagcatcatatgatattttgcttatgcttttagtttttttctt 4776123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 22067985 - 22067881
Alignment:
Q  123 gatagagcatcatatgacattttggttatgtttttagtacttttc-tttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  22067985 gataaagcatcatatgacattttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgag 22067886  T
Q  222 aaaca 226  Q
     ||||    
T  22067885 gaaca 22067881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 29544459 - 29544559
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| ||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||    
T  29544459 gagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaac 29544558  T
Q  226 a 226  Q
    |    
T  29544559 a 29544559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 7815267 - 7815363
Alignment:
Q  131 atcatatgacattttggttatgtttttagtacttttct-ttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| || | ||||||||||||| |||||||    
T  7815267 atcatatgatattttggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaaca 7815363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 20446178 - 20446279
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||| ||||||| ||||| | |||||||||| ||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||    
T  20446178 agagcaacatatgatattttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaa 20446277  T
Q  225 ca 226  Q
    ||    
T  20446278 ca 20446279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 21471736 - 21471825
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||| | |||||||||    
T  21471736 agagcatcatatgccattttggttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatg 21471825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 315114 - 315219
Alignment:
Q  116 aattgacgatagagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    |||||| ||||||| ||||||||| ||||||  ||||||||  |||||||| |||   ||||||||| |||||||||||||||||||| |||||||||||    
T  315114 aattgatgatagagtatcatatgatattttgactatgttttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatg 315213  T
Q  215 gtttga 220  Q
    ||||||    
T  315214 gtttga 315219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 7142037 - 7142130
Alignment:
Q  126 agagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||||||||||||||||||| || |||||||||| || |||||||||||||| |||||||||||| ||||||  | |  |||||||||||||||    
T  7142037 agagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggttt 7142130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 20470969 - 20470885
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| | |||||||||||||||| |||  || |||||||||||||||||| | |||||| |||||||||||||||||| ||||    
T  20470969 ttttggctttgtttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaaca 20470885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 23124864 - 23124940
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||| | |||| |||| ||||    
T  23124864 tatgtttttagtacttt-ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaaca 23124940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 1255340 - 1255293
Alignment:
Q  174 tttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgag 1255293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 9385455 - 9385522
Alignment:
Q  153 tttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttga 220  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||| ||| | |||||| ||||||||||    
T  9385455 tttttagcacttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttga 9385522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 18496505 - 18496600
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||| ||||||| ||||| || ||||||||||||| ||||||||||||||||||  ||| ||| ||  | ||||||||||||||||| |||||||    
T  18496505 gagcaccatatgatattttaggctatgtttttagtagttttctttgcatttgaaggaaaacaagttgcaatttagagaagttgtcaattgtttgag 18496600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 4092601 - 4092671
Alignment:
Q  116 aattgacgatagagcatcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaa 185  Q
    |||||| || |||| ||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||    
T  4092601 aattgatgacagagaatcatatgacatttttgctatatttttagtactttttctttgcatttgaagacaaa 4092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 2632612 - 2632528
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgt 209  Q
    |||| ||| ||||| ||||| ||||||||| |||||||||| |||||||||| ||||| ||||  ||||||||||||| ||||||    
T  2632612 agagtatcgtatgatatttttgttatgtttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgt 2632528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 9761581 - 9761537
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtacttttcttt 170  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  9761581 agagcatcatatgacattttggctacgtttttagtacttttcttt 9761537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 9802040 - 9801996
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtacttttcttt 170  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  9802040 agagcatcatatgacattttggctacgtttttagtacttttcttt 9801996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 9066103 - 9066160
Alignment:
Q  157 tagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    |||||||||| || | ||||||||||||||||| ||| || |||||||||||||||||    
T  9066103 tagtacttttgttagaatttgaagacaaataagttgatagatagagaagttgtcaatg 9066160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 21545950 - 21545874
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||||||| |  |||||||| || ||||||| | ||| | ||||||||||||||||||| ||||    
T  21545950 tatgtttttagtacttttcttttccattgaagac-aacaagatgataattaaataagttgtcaatggtttgaggaaca 21545874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 7494679 - 7494751
Alignment:
Q  154 ttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||||| ||||||||||| | | |||||| || |  |||||| ||||||||||| ||||    
T  7494679 ttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgttaatggtttgaggaaca 7494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 23196482 - 23196435
Alignment:
Q  25 ttccttacctatgttgaaactacaatattgaatattgataaggaaaaa 72  Q
    ||||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  23196482 ttccttacctatgttgaaactaccatatagaatattgttaaagaaaaa 23196435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 2353415 - 2353357
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaa 184  Q
    ||||||| ||||| ||||| || ||||||||||||  ||||||||||||||||||||||    
T  2353415 gagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 19140133 - 19140085
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataaga 190  Q
    |||||| |||||||| |||  ||||||||||||||||||||||| ||||    
T  19140133 ttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 19140085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 20739532 - 20739484
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataaga 190  Q
    |||||| |||||||| |||  ||||||||||||||||||||||| ||||    
T  20739532 ttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 20739484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 8247833 - 8247732
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||||||||||  |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| ||    
T  8247833 agagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaa 8247734  T
Q  225 ca 226  Q
    ||    
T  8247733 ca 8247732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 21451989 - 21451900
Alignment:
Q  128 agcatcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggt 216  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  21451989 agcatcatatgacattttggctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggt 21451900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 12424090 - 12423989
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||  ||||| ||||||||||| ||    
T  12424090 agagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaa 12423991  T
Q  225 ca 226  Q
    ||    
T  12423990 ca 12423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 11770173 - 11770077
Alignment:
Q  123 gatagagcatcatatgacattttggt-tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||||||||||| |||| ||||| || |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  11770173 gatagagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagagaatttgtcaatggttt 11770077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 25266503 - 25266420
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||| ||| |||||    
T  25266503 ttttggttatgtttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaaca 25266420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 23223367 - 23223451
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| |||||||| |||||||||||||||||||  |||||| ||||||| ||||||||| |||||||||||||||||| ||||    
T  23223367 ttttggctatgttttaagtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaaca 23223451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 26657439 - 26657511
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||| |||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||||    
T  26657439 tatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgag 26657511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 50047137 - 50047221
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||| |  ||||| ||||||||||| |||||||||||    
T  50047137 ttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaaca 50047221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 30675422 - 30675524
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttg-catttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaa 223  Q
    ||||||||||||||||||||  | ||||||||||| ||||||||||  |||||| ||||||||||||||| | |||||| |||||||||||||||||| |    
T  30675422 agagcatcatatgacattttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgagga 30675521  T
Q  224 aca 226  Q
    |||    
T  30675522 aca 30675524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 12810285 - 12810362
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||||||||||||  |||| |||||||||||| |||||| ||||| |||||||||||||||||| ||||    
T  12810285 tatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaaca 12810362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 23519930 - 23519830
Alignment:
Q  128 agcatcatatgacattttggttatgttttt--agtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| |||||  |||||||||  ||||||||||||||| |||||||||||||| |||||||| |||| ||||||| ||| ||||||| |||    
T  23519930 agcatcatatgaccttttgactatgtttttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatagtttgaggaac 23519831  T
Q  226 a 226  Q
    |    
T  23519830 a 23519830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 30781699 - 30781783
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgt 209  Q
    ||||||||||  || ||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  30781699 agagcatcatgcgatatttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 25730718 - 25730651
Alignment:
Q  154 ttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||| |||||    
T  25730718 ttttagtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgag 25730651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 18301157 - 18301083
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaa--ataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||| ||||||||||||||||||||||||||  | || |||||||||| ||  |||||||||||||||||    
T  18301157 tatgtttttggtacttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgag 18301083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 24903433 - 24903370
Alignment:
Q  163 ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||||||||||||||| ||||||| |||| | ||||||||||| |||||| ||||    
T  24903433 ttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaaca 24903370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 34381668 - 34381742
Alignment:
Q  146 ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttga 220  Q
    ||||||||||||| || |||| ||||||||||||| |||||||||||  | |||||| |||||| ||||||||||    
T  34381668 ggttatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttga 34381742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 18391046 - 18391122
Alignment:
Q  150 atgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||  |||||| || |||| |||||||||||||||  | ||| ||||||||||||||||||||| ||||    
T  18391046 atgtttttagttattttctgtgtatttaaagacaaataagatgtcatttaaagaagttgtcaatggtttgagtaaca 18391122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 25777983 - 25777932
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttag 200  Q
    |||||| ||||| |||||||||||||||||| | ||||||||||||||||||    
T  25777983 tatgttcttagtgcttttctttgcatttgaaaataaataagatgagagttag 25777932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 26101997 - 26102092
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||| ||||| ||  |||||||||||  |||||||||||||||||  ||||||||| |  | |||||||| || |||||||||||||    
T  26101997 gagcatcatatgatattttaggcgatgtttttagttattttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggtttgag 26102092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 25494598 - 25494554
Alignment:
Q  182 caaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| ||||| |||||||| |||||||||||||||||| ||||    
T  25494598 caaataggatgaaagttagaggagttgtcaatggtttgaggaaca 25494554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 30355266 - 30355366
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||| ||||| || ||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  30355266 gagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgataaac 30355365  T
Q  226 a 226  Q
    |    
T  30355366 a 30355366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 15574868 - 15574953
Alignment:
Q  130 catcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    |||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||    
T  15574868 catcatatgacattttggctatcttgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaatg 15574953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 13759622 - 13759526
Alignment:
Q  131 atcatatgacattttggttatgtttttagtacttttc-tttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||  ||||| || |||||||| |||||||  |||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  13759622 atcatatgatcttttgattgtgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaca 13759526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 15576337 - 15576254
Alignment:
Q  127 gagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgt 209  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||| |||| |||||||||| ||||||| |||||| ||||||    
T  15576337 gagcatcatatgatatttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgagaattagaggagttgt 15576254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 14924596 - 14924492
Alignment:
Q  123 gatagagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||| ||||||| || || || ||||||||||||  |||||||||||||||||| ||||||| |||  | |||||| ||||||||||||||||||    
T  14924596 gatagagcaccatatgatatattaggctatgtttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgag 14924497  T
Q  222 aaaca 226  Q
     ||||    
T  14924496 gaaca 14924492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 15998454 - 15998546
Alignment:
Q  130 catcatatgacattttggttatgtttttagtac-ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||||||||||  |||| | ||||||||||||| |||  || ||||||||||    
T  15998454 catcatatgacattttggctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggtttgag 15998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 16527835 - 16527925
Alignment:
Q  126 agagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||||| | ||||| || |||||||||||||||||||||||      ||||||||||||||||||||||||| |||||||  |||||||||    
T  16527835 agagcatcatataatatttttggctatgtttttagtacttttctttg------aagacaaataagatgagagttagaggagttgtcggtggtttgag 16527925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 17860617 - 17860523
Alignment:
Q  129 gcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| |||||||||| ||||||||||||||||    |||||| |||||| || |||||| |  |||||||||||| |||||||||||||||| ||||    
T  17860617 gcatcaaatgacatttttggttatgtttttagta----tctttgtatttgatgataaataataaaagagttagagaatttgtcaatggtttgaggaaca 17860523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 16387400 - 16387328
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    ||||||||||||| |||||||||  ||||||||| |||||||||  | |||||  ||||||||||||||||||    
T  16387400 tatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgag 16387328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 26512929 - 26512859
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttg 219  Q
    ||||||||||||  |||| ||||||||||||| ||||||||| |  | |||||| ||||||||||||||||    
T  26512929 tatgtttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttg 26512859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 26518045 - 26517975
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttg 219  Q
    ||||||||||||  |||| ||||||||||||| ||||||||| |  | |||||| ||||||||||||||||    
T  26518045 tatgtttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttg 26517975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 20495945 - 20495868
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||||| ||||||||| |||||||| ||| ||||| |  |  |||||||||| ||||||||||||| ||||    
T  20495945 tatgtttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaaca 20495868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 1755707 - 1755663
Alignment:
Q  146 ggttatgtttttagtacttttctttgcatttgaagacaaataaga 190  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||    
T  1755707 ggttatgtttttagttattttctttgaatttgaagacaaataaga 1755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 12972543 - 12972471
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatg 214  Q
    |||||| ||||||||||||  |||||||||||||||||| ||| ||||| |  | |||||| |||||||||||    
T  12972543 ttttggctatgtttttagttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatg 12972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 32930610 - 32930554
Alignment:
Q  163 ttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttg 219  Q
    |||| ||||||||||||| |||||||||||  | |||||| ||||||||||||||||    
T  32930610 ttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttg 32930554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 22262332 - 22262388
Alignment:
Q  168 tttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||| ||| |||||||||||||| |  | |||||| |||||||||||||||||||||    
T  22262332 tttgtattcgaagacaaataagaagtaatttagaggagttgtcaatggtttgagaaa 22262388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 25315406 - 25315306
Alignment:
Q  127 gagcatcatatgacattttggttatgttttt-agtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||| |||||| |||    
T  25315406 gagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgctttgaggaac 25315307  T
Q  226 a 226  Q
    |    
T  25315306 a 25315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 1676469 - 1676370
Alignment:
Q  128 agcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||| || ||||| |||||||||||||||||| ||||    
T  1676469 agcatcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaaca 1676370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 1682997 - 1682898
Alignment:
Q  128 agcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||| || ||||| |||||||||||||||||| ||||    
T  1682997 agcatcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaaca 1682898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 9783159 - 9783058
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||||||||||||||||||||  |||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||| |||||||||| ||||||| ||    
T  9783159 agagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaa 9783060  T
Q  225 ca 226  Q
    ||    
T  9783059 ca 9783058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 34864450 - 34864371
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  34864450 tttttgttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgag 34864371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 5906872 - 5906795
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||||    
T  5906872 tatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaaca 5906795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 12111506 - 12111407
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||  ||||| |||||||||||||||||| ||    
T  12111506 agagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa-aagatgaga-atagaggagttgtcaatggtttgaggaa 12111409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 15192142 - 15192213
Alignment:
Q  126 agagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagag 196  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15192142 agagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgagag 15192213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 27302719 - 27302818
Alignment:
Q  128 agcatcatatgacattttggttatgttttt-agtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||||||| ||||||||  ||||||||| | || ||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||    
T  27302719 agcatcatataacattttgactatgttttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaaca 27302818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 18897934 - 18898023
Alignment:
Q  130 catcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||| |||||| ||||  | |||||||||||||    
T  18897934 catcatatgacatttttggctgtgtttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggttt 18898023  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 25050224 - 25050145
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||| ||||||||||||| |||| |||| ||||||||||||||||||||| |||||||||| || |||| ||||||||    
T  25050224 ttttggctatgtttttagtatttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgag 25050145  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 1696746 - 1696652
Alignment:
Q  123 gatagagcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||| |||||||||||||||||| || ||| |||  ||||||||| ||| ||||||||||||||||||||||||| || || |||||||||||||||    
T  1696746 gataaagcatcatatgacatttttggctatattt--agtacttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 4953621 - 4953722
Alignment:
Q  126 agagcatcatatgacattttggttatgt-ttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 224  Q
    |||| ||||||||||||| ||  ||||| |||||||| ||||||||| ||||||||| |||||||||| ||| || || |||||| ||||||||||| ||    
T  4953621 agagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaa 4953720  T
Q  225 ca 226  Q
    ||    
T  4953721 ca 4953722  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 39120898 - 39120842
Alignment:
Q  16 ttcccaaacttccttacctatgttgaaactacaatattgaatattgataaggaaaaa 72  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  39120898 ttcccaaagttccttacctatgctgaaactaccatattgaatattgttaaggaaaaa 39120842  T

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Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 21077199 - 21077272
Alignment:
Q  152 gtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaac 225  Q
    |||||||||  |||||||||||||||||| ||||| ||| |  | |||||| ||||||||||||||||||||||    
T  21077199 gtttttagttattttctttgcatttgaaggcaaattagaagtcatttagaggagttgtcaatggtttgagaaac 21077272  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 10320398 - 10320294
Alignment:
Q  123 gatagagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||||||||||||||||||||  | ||||||||||||| |||||||| |||||||||| ||| ||| | || | ||||  |||||| ||| ||| |||    
T  10320398 gatagagcatcatatgacatttttcgctatgtttttagtaattttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagttagag 10320299  T
Q  222 aaaca 226  Q
    |||||    
T  10320298 aaaca 10320294  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 22119582 - 22119686
Alignment:
Q  123 gatagagcatcatatgacattttg-gttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgag 221  Q
    |||||| |||||||||| |||||  | ||||||||||||  |||||||||||||||||| ||||| ||| |  | ||| || ||||||||||||||||||    
T  22119582 gatagaacatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgag 22119681  T
Q  222 aaaca 226  Q
     ||||    
T  22119682 gaaca 22119686  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 31860039 - 31859955
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    |||||| ||||||||||||  |||| |||||||||||||| |||||| | |  | ||||||||||||||||| ||||||| ||||    
T  31860039 ttttggctatgtttttagttattttttttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaaca 31859955  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 5125581 - 5125629
Alignment:
Q  163 ttttctttgcatttgaagacaaataagatgagagttagagaagttgtca 211  Q
    |||| |||||||||||||||||||||||||||| |||||| | ||||||    
T  5125581 ttttttttgcatttgaagacaaataagatgagaattagaggaattgtca 5125629  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 46647159 - 46647228
Alignment:
Q  149 tatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggttt 218  Q
    |||||||||| |  ||||||||| ||||||||  ||||||||  | | ||||||||||||||||||||||    
T  46647159 tatgtttttaattattttctttgtatttgaaggaaaataagagaaaatttagagaagttgtcaatggttt 46647228  T

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Target: scaffold0171 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 6137 - 6236
Alignment:
Q  128 agcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaaca 226  Q
    ||||||||||| |||||| || |||||||||||||||||||||| ||||| || ||||||||||||||||||| |  |||| ||||||||||||| ||||    
T  6137 agcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaaca 6236  T

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Target: scaffold0171; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 21337 - 21402
Alignment:
Q  127 gagcatcatatgacattttgg-ttatgtttttagtacttttctttgcatttgaagacaaataagat 191  Q
    ||||||||||||| |||||   |||||||||||||  ||||||||||||||||||| |||||||||    
T  21337 gagcatcatatgatattttttattatgtttttagtgtttttctttgcatttgaagaaaaataagat 21402  T

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Target: scaffold0002 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 446944 - 447016
Alignment:
Q  126 agagcatcatatgacattttggttatgtttttagtactttt-ctttgcatttgaagacaaataagatgagagt 197  Q
    |||||||||||||| ||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  446944 agagcatcatatgatatttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgagagt 447016  T

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Target: scaffold0386 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 13230 - 13153
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtttg 219  Q
    |||| |||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||| | || |||||||||||    
T  13230 ttttagttatgtttttagtacttttattttcatattaagacaaataagatgagagttagaggatttttcaatggtttg 13153  T

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Target: scaffold0386; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 8881 - 8793
Alignment:
Q  130 catcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagatgagagttagagaagttgtcaatggtt 217  Q
    |||||||||| ||||| |||||| |||||||||||||| ||| ||||| |||| |||||||||||| ||||||| | ||||||||||||    
T  8881 catcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgagggttagaggatttgtcaatggtt 8793  T

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Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 27128 - 27064
Alignment:
Q  128 agcatcatatgacatttt-ggttatgtttttagtacttttctttgcatttgaagacaaataagat 191  Q
    ||||||| |||| ||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  27128 agcatcacatgatattttcggctatgtttttagtacttttctttgcatttgaagataaataagat 27064  T

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Target: scaffold0282 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 22704 - 22661
Alignment:
Q  142 ttttggttatgtttttagtacttttctttgcatttgaagacaaa 185  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||    
T  22704 ttttggctatgttttttgtacttttatttgcatttgaagacaaa 22661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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