View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_4 (Length: 502)
Name: NF14965_low_4
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 156 - 482
Target Start/End: Original strand, 6839352 - 6839680
Alignment:
| Q |
156 |
gatgtaatgaatactgaacacttggcgtggacggtgtggatgtttggattattcggatgtggatggataggattatcaaattccaataatagaataagaa |
255 |
Q |
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| T |
6839352 |
gatgtaatgaatactgaacacttggcttggacggtgtggatgtttggattattcggatgtggatggataggattatcaaattccaataatagaataagaa |
6839451 |
T |
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| Q |
256 |
gaaataaacaattaacatgtcatttttcaggtcaaaaaagaacatgttaatttttctttgaaaaataaattatatgtcatcctcgtaactgtcctaatga |
355 |
Q |
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| T |
6839452 |
gaaataaacaattaacatgtcatttttcaggtcaaaaaagaacatgttattttttctatgaaaaataaattatatgtcatcctcgtaacagtcctaatga |
6839551 |
T |
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| Q |
356 |
ttgttaccaaatgcaagcaaagtccgagttttgggtacgtttgtctaatttggtcaatatacggttttaattgctagatcactcatag--aaaataaaat |
453 |
Q |
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| T |
6839552 |
ttgttaccaaatgcaagcaaagtccgagttttgggtacgtttgtctaatttggtcaataaacggttttaattgctagatcaatcatagaaaaaaaaaaat |
6839651 |
T |
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| Q |
454 |
acttggtggacaacctctaatgggtatat |
482 |
Q |
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| T |
6839652 |
acttggtggacaacctctaatggctatat |
6839680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 6839206 - 6839308
Alignment:
| Q |
10 |
tagattattctaaacagaatagaatagaataaataataacatgtcgattgcaaaatagatgaatggatcagaacgacaacgtgtaatggccgacttctgg |
109 |
Q |
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| T |
6839206 |
tagattattataaatagaatagaatagaataaataataacatgtcgattgcaaaatagatgaatggatcagaacgacaacgtgtaatggccgacttctgg |
6839305 |
T |
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| Q |
110 |
aat |
112 |
Q |
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||| |
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| T |
6839306 |
aat |
6839308 |
T |
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