View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_8 (Length: 421)
Name: NF14965_low_8
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 24914062 - 24914273
Alignment:
| Q |
13 |
aatatagatataagattgaaaaccagtaatagaacattgattatgacataacaaaggagattatttttatgtacaataggtttaacaaaatcagttcaga |
112 |
Q |
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| T |
24914062 |
aatatagatataagattgaaaaccagtaatagaacattgattatgacataacaaaggagattattttcatgtacaataggtttaactaaatcagttcaga |
24914161 |
T |
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| Q |
113 |
tcaaaaacagcaagatttacctttgttgaattaaaagtctcaatagaagcaagatttccatcgatgaaactcaagagatgtttgttatgctccaataggg |
212 |
Q |
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| T |
24914162 |
tc-aaaacagcaagatttaccttcgttgaattaaaagtctcaatagaagcaagatttccatcgattaaacttaagagctgtttgttgtgctccaatagtg |
24914260 |
T |
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| Q |
213 |
cctttgcggcctc |
225 |
Q |
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| T |
24914261 |
cctttgcggcctc |
24914273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 285 - 421
Target Start/End: Original strand, 24914333 - 24914469
Alignment:
| Q |
285 |
ggacatgcaaatagataagatgccaaacttaacattccaaaagataaattatgtattcaaatatcaaatgattttaaagctattaaggaaccaaccttcc |
384 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24914333 |
ggacatgcaaatagataagatgccaagcttaacattccaaaagataaattatgtattcaaatatcaaatgattttaaagctactaaggaaccaaccttcc |
24914432 |
T |
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| Q |
385 |
aacgagatgccaccatcattgtccatccctaactctt |
421 |
Q |
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| T |
24914433 |
aaagagatgccaccatcattgtccatccttaactctt |
24914469 |
T |
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