View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14965_low_9 (Length: 420)
Name: NF14965_low_9
Description: NF14965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14965_low_9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 166 - 420
Target Start/End: Original strand, 15375024 - 15375279
Alignment:
| Q |
166 |
cttaagaaaaataggtaaataatcccatcaacaatgtatgtaataacatgaccatgactagtct---tatcagcacaagcttcgaagcctctaatagtcc |
262 |
Q |
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| T |
15375024 |
cttaagaaaaataggtaaataatcccatcaacaatgtatgttataacatgaccatgactagtctgcttatcagcacaagcatcgaagcctctaatattcc |
15375123 |
T |
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| Q |
263 |
gatagaggaccttcattgaaccagaggagtaattgcacccttagactaggttttgtagtggacttgatagagttcttttttctacctcttagtaagttaa |
362 |
Q |
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| T |
15375124 |
gatagaggaccttcattgagccagaggaataattgcacccttagactgggttttgtaatggacttgatagagttcttttttctacctcttagtaagttaa |
15375223 |
T |
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| Q |
363 |
ggcgtaaattgttctgtaggctcctccgtctctgaaggcaaaaatctgtcgtatcaaa |
420 |
Q |
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| T |
15375224 |
ggcgtaaa-tgttctaaaggctcctccgtctctggaggc-aaaatttgtcgtatcaaa |
15375279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15374874 - 15374919
Alignment:
| Q |
1 |
ccccgaaggtgctcttgtcttctaccacctgctctgaaattttatt |
46 |
Q |
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| T |
15374874 |
ccccgaaggtacttttgtcttctaccacctgctctgaaattttatt |
15374919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 355
Target Start/End: Original strand, 30709060 - 30709171
Alignment:
| Q |
244 |
tcgaagcctctaatagtccgatagaggaccttcattgaaccagaggagtaattgcacccttagactaggttttgtagtggacttgatagagttctttttt |
343 |
Q |
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| T |
30709060 |
tcgaagcctctaatattctaaacgaagaccttcattgagccggaagagtattttcacccttagaccgggttttgtaggaaactcgatagagttgttgttt |
30709159 |
T |
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| Q |
344 |
ctacctcttagt |
355 |
Q |
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| T |
30709160 |
ctacttcttagt |
30709171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 15374986 - 15375019
Alignment:
| Q |
112 |
gaacgaagggaatctaaaattcggaaggctatgt |
145 |
Q |
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| T |
15374986 |
gaacgaagggaatctaaaattcagaaggctatgt |
15375019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 17906192 - 17906302
Alignment:
| Q |
117 |
aagggaatctaaaattcggaaggctatgtatgtccttgtaaaaatccagcttaagaaaaataggtaaataatcccatca-acaatgtatgtaataacatg |
215 |
Q |
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| T |
17906192 |
aagggaatctaaaattcggaagaccatgtttgtccctgtaaaaatcatgcctaagtaaaacagataaataatcccaccagacaacatttgtaataacatg |
17906291 |
T |
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| Q |
216 |
accatgactag |
226 |
Q |
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| T |
17906292 |
accatgactag |
17906302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 389
Target Start/End: Original strand, 28299189 - 28299350
Alignment:
| Q |
228 |
cttatcagcacaagcttcgaagcctctaatagtccgatagaggaccttcattgaaccagaggagtaattgcacccttagactaggttttgtagtggactt |
327 |
Q |
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|||| ||| |||||| || |||||||||| | ||| ||||| |||||||||||| ||||||||||| |||||||||| ||||||| ||| ||| |
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| T |
28299189 |
cttaacagtacaagcatcaaagcctctaaaattccaatagaagaccttcattgagtaggaggagtaattacacccttagatcaggttttttaggaaactc |
28299288 |
T |
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| Q |
328 |
gatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctcc |
389 |
Q |
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| T |
28299289 |
gatagagttcttttttccgcttcatactaaaataaggtgtaaattgttttgtaggctcctcc |
28299350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 389
Target Start/End: Complemental strand, 28512884 - 28512723
Alignment:
| Q |
228 |
cttatcagcacaagcttcgaagcctctaatagtccgatagaggaccttcattgaaccagaggagtaattgcacccttagactaggttttgtagtggactt |
327 |
Q |
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|||| ||| |||||| || |||||||||| | ||| ||||| |||||||||||| ||||||||||| |||||||||| ||||||| ||| ||| |
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| T |
28512884 |
cttaacagtacaagcatcaaagcctctaaaattccaatagaagaccttcattgagtaggaggagtaattacacccttagatcaggttttttaggaaactc |
28512785 |
T |
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| Q |
328 |
gatagagttcttttttctacctcttagtaagttaaggcgtaaattgttctgtaggctcctcc |
389 |
Q |
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| T |
28512784 |
gatagagttcttttttccgcttcatactaaaataaggtgtaaattgttttgtaggctcctcc |
28512723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 376
Target Start/End: Original strand, 14164474 - 14164604
Alignment:
| Q |
246 |
gaagcctctaatagtccgatagaggaccttcattgaaccagaggagtaattgcacccttagactaggttttgtagtggacttgatagagttcttttttct |
345 |
Q |
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||||| ||||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||| | |||||||| ||| |||| ||||||||||||| |
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| T |
14164474 |
gaagcatctaatattccaatagaagaccttcattgagaaagaggagtaattgcacctttagaccggattttgtaggacactcgatatagttcttttttct |
14164573 |
T |
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| Q |
346 |
acctcttagtaagttaaggcgtaaattgttc |
376 |
Q |
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| T |
14164574 |
gctttttagttaggtaaggtgtaagttgttc |
14164604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 33892692 - 33892802
Alignment:
| Q |
117 |
aagggaatctaaaattcggaaggctatgtatgtccttgtaaaaatccagcttaagaaaaataggtaaataatcccatca-acaatgtatgtaataacatg |
215 |
Q |
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||||||||||||||| | |||| | |||||||||| | |||||||| || ||||||||||||||||| ||| ||| || |||| | |||||||||||| |
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| T |
33892692 |
aagggaatctaaaatacagaagaccatgtatgtccctctaaaaatcttgcctaagaaaaataggtaaagaattccaccagacaacatttgtaataacatg |
33892791 |
T |
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| Q |
216 |
accatgactag |
226 |
Q |
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| T |
33892792 |
accataactag |
33892802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 14164355 - 14164427
Alignment:
| Q |
112 |
gaacgaagggaatctaaaattcggaaggctatgtatgtccttgtaaaaatccagcttaagaaaaataggtaaa |
184 |
Q |
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| T |
14164355 |
gaactaagggaatctaaaattcagtagaccgtgtatgtccttgtaaaaatcctgcctaaaaaaaataggtaaa |
14164427 |
T |
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