View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14966_high_1 (Length: 391)
Name: NF14966_high_1
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14966_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 55081037 - 55080676
Alignment:
| Q |
20 |
taatacatgcactttgacaccttgatagatatcatttttcatacatgtctaacttaataattcaatatttacaccaatgtcaagtaaccaataatctctc |
119 |
Q |
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| T |
55081037 |
taatacatgcactttcacaccttgatagatatcatttttcatacatgtctaacttaataattcaatatttacaccaatgtcaggtaaccaataatctctc |
55080938 |
T |
|
| Q |
120 |
atccatcaagaaactccatgctcacctactcactaaaggcactctcttcattctccatgatcttcacacccaactcatttccacatacacttcatgcttt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55080937 |
atccatcaagaaactccatgctcacctactcactaaaggcactctcttcattctccatgatcttcacacccaactcatttccacatacacttcattcttt |
55080838 |
T |
|
| Q |
220 |
ccaagtaacaatcttcaaacacttaccaatagtttcttcaaatgcatgaattccaccaacccattacatttcaatgtcatcatatctcatttctgtcgta |
319 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55080837 |
ccaagcaacaatcttcaaacacttaccaatagtttcttcaaatgcatgaattccaccaacccattacatttcaatgtcatcatatctcatttctgtcgta |
55080738 |
T |
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| Q |
320 |
aaggtttcccctttcttgctctcaccaccttttcctttatgcacaccaatcacgttcctttg |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55080737 |
aaggtttcccctttcttgctctcaccaccttttcctttatgcacaccaatcacgttcctttg |
55080676 |
T |
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