View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14966_high_3 (Length: 271)

Name: NF14966_high_3
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14966_high_3
NF14966_high_3
[»] chr8 (3 HSPs)
chr8 (20-255)||(39581496-39581731)
chr8 (139-179)||(24305951-24305991)
chr8 (82-126)||(3029909-3029953)
[»] chr4 (1 HSPs)
chr4 (20-255)||(31183026-31183263)
[»] chr7 (2 HSPs)
chr7 (20-255)||(7313736-7313972)
chr7 (83-132)||(47508262-47508311)
[»] chr2 (1 HSPs)
chr2 (20-255)||(34387202-34387440)
[»] chr1 (3 HSPs)
chr1 (37-255)||(52143492-52143720)
chr1 (23-178)||(29183066-29183226)
chr1 (158-255)||(24039038-24039135)
[»] chr3 (2 HSPs)
chr3 (139-173)||(10301538-10301572)
chr3 (139-173)||(10339710-10339744)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 39581731 - 39581496
Alignment:
Q  20 acaaaaactcacttcttcttcttctacctcttactcacatcaactattttatattctatgataaaaaatcccaaattccctcttcatcttctcaatcatc 119  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  39581731 acaaaaactcacttctccttcttctacctcttactcacatcaactattttatattctatgataaaaaattctaaattccctcttcatcttctcaatcatc 39581632  T
Q  120 atcacacataacagccatcattccttcactcttcttctctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacataaataacacaaca 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  39581631 atcacacataacagccagcattccttcactcttcttctctcaacacaacacaaaaataccttcttctttttttgtgaaaatacacataaataacacaaca 39581532  T
Q  220 caaggagtcatagatctgaaacgcgtttagcatatt 255  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39581531 caaggagtcatggatctgaaacgcgtttagcatatt 39581496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 24305991 - 24305951
Alignment:
Q  139 attccttcactcttcttctctcaacacaacacaaaaatacc 179  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24305991 attccttcactcttcttctctcaacacaacacaaaaatacc 24305951  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 3029909 - 3029953
Alignment:
Q  82 aaaaaatcccaaattccctcttcatcttctcaatcatcatcacac 126  Q
    |||||| ||||||||| ||||| || |||||||||||||||||||    
T  3029909 aaaaaaccccaaattctctcttaattttctcaatcatcatcacac 3029953  T

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Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 31183026 - 31183263
Alignment:
Q  20 acaaaaactcacttcttcttcttctacctcttactcacatcaactattttatattctatgataaaaaa--tcccaaattccctcttcatcttctcaatca 117  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  31183026 acaaaaactcacttctccttcttctacctcctactcacatcaactatttcatattctatgataaaaaaaatcccgaattccctcttcatcttctcaatca 31183125  T
Q  118 tcatcacacataacagccatcattccttcactcttcttctctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacataaataacacaa 217  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  31183126 tcatcacacataacagacagcattccttcactcttcttctctcaacacaacacaaaaataccttcttctttttttgtgaaaatacacataaataacacaa 31183225  T
Q  218 cacaaggagtcatagatctgaaacgcgtttagcatatt 255  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31183226 cacaaggagtcatagatctgaaacacgtttagcatatt 31183263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 7313972 - 7313736
Alignment:
Q  20 acaaaaactcacttcttcttcttctacctcttactcacatcaactattttatattctatgat-aaaaaatcccaaattccctcttcatcttctcaatcat 118  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  7313972 acaaaaactcgcttctccttcttctacctcctactcacatcaactattttatatcctatgatgaaaaaaacccaaattccctcttcatcttctcaatcat 7313873  T
Q  119 catcacacataacagccatcattccttcactcttcttctctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacataaataacacaac 218  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||    
T  7313872 catcacacataacagtcaacattccttcactcttcttctctcaacacaacacaaaaataccttcttctttttttgtgaaaatacacataaataacactac 7313773  T
Q  219 acaaggagtcatagatctgaaacgcgtttagcatatt 255  Q
    |||||||| ||||||||||||||||||||||||||||    
T  7313772 acaaggagccatagatctgaaacgcgtttagcatatt 7313736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 47508311 - 47508262
Alignment:
Q  83 aaaaatcccaaattccctcttcatcttctcaatcatcatcacacataaca 132  Q
    ||||| |||||||||| |||| ||||| ||||||||||||||||| ||||    
T  47508311 aaaaaccccaaattccatcttaatcttatcaatcatcatcacacaaaaca 47508262  T

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Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 34387202 - 34387440
Alignment:
Q  20 acaaaaactcacttcttcttcttctacctcttactcacatcaactattttatattctatgataaaaaatccc---aaattccctcttcatcttctcaatc 116  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||   || ||| ||||||||||||||||||    
T  34387202 acaaaaactcacttctccttcttctacctcctactcacatcaactattttatattctatgataaaaaaaaccttaaatttctctcttcatcttctcaatc 34387301  T
Q  117 atcatcacacataacagccatcattccttcactcttcttctctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacataaataacaca 216  Q
     ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  34387302 gtcatcacacataacaaccagcattccttcactcttcttctctcaacacaacacaaaaataccttcttctttttttgtgaaaatacacataaataacaca 34387401  T
Q  217 acacaaggagtcatagatctgaaacgcgtttagcatatt 255  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  34387402 acacaaggagccatagatctgaaacacgtttagcatatt 34387440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 52143492 - 52143720
Alignment:
Q  37 cttcttctacctcttactcacatcaactattttatattctatgataaaaaatcccaaattccctcttcatcttctcaatcatcatcacacataacagcca 136  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |    
T  52143492 cttcttctacctcctactcacatcaactattttatattctatgataaaaaaccccaaattccctcttcatcttctcaatcataatcacacataacaacta 52143591  T
Q  137 tcattccttcactcttcttctctcaacacaacacaaaaatacc----------ttcttcnnnnnnngtgaaaatacacataaataacacaacacaaggag 226  Q
     ||||||||||||||||||||||||||||||||||||||||||          || ||        |||||||||||||||||||| |||||||||||||    
T  52143592 gcattccttcactcttcttctctcaacacaacacaaaaatacctttttttttttttttttttttttgtgaaaatacacataaataaaacaacacaaggag 52143691  T
Q  227 tcatagatctgaaacgcgtttagcatatt 255  Q
     ||||||||||||||||||||||||||||    
T  52143692 ccatagatctgaaacgcgtttagcatatt 52143720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 29183226 - 29183066
Alignment:
Q  23 aaaactcacttcttcttcttctacctcttactcacatc--aactattttatattctatgata--aaaaatcccaaattccctcttcatcttctcaatcat 118  Q
    ||||||||||| | |||||||||| || ||||||||||  ||||||||||||||| || |||  ||||| | |||||| ||||||||||||||| |||||    
T  29183226 aaaactcacttttccttcttctacatcctactcacatctcaactattttatattccataatataaaaaaactcaaatttcctcttcatcttctcgatcat 29183127  T
Q  119 catcacacataacagccatcattccttcactcttcttctctc-aacacaacacaaaaatac 178  Q
    |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||    
T  29183126 catcacacataacaaccataattccttcactcttcttctctctaacacaacacaaaaatac 29183066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 24039135 - 24039038
Alignment:
Q  158 ctcaacacaacacaaaaataccttcttcnnnnnnngtgaaaatacacataaataacacaacacaaggagtcatagatctgaaacgcgtttagcatatt 255  Q
    ||||||||||||||||||||||||||||       | |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  24039135 ctcaacacaacacaaaaataccttcttcttttctagagaaaatacgcataaataacacaacacaaggagccatagatctgaaacccgtttagcatatt 24039038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 10301572 - 10301538
Alignment:
Q  139 attccttcactcttcttctctcaacacaacacaaa 173  Q
    |||| ||||||||||||||||||||||||||||||    
T  10301572 attctttcactcttcttctctcaacacaacacaaa 10301538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 10339744 - 10339710
Alignment:
Q  139 attccttcactcttcttctctcaacacaacacaaa 173  Q
    |||| ||||||||||||||||||||||||||||||    
T  10339744 attctttcactcttcttctctcaacacaacacaaa 10339710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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