View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14966_high_4 (Length: 262)
Name: NF14966_high_4
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14966_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 39813546 - 39813309
Alignment:
| Q |
13 |
attattctactgtcatggctattatgtactatttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgctgtc |
112 |
Q |
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| T |
39813546 |
attattctactgtcatggctattatgtactatttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgctgtc |
39813447 |
T |
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| Q |
113 |
catct----------cacaatcaataaattgtactccacttttgaatgtctggctaaatttatcattctttgtacatatatgtgtgataatgggtcaaat |
202 |
Q |
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| T |
39813446 |
catctttatggtgatcacaatcaataaattgtactccacttttgaatgtctggctaaatttatcattctttgtacatatatgtgtgataatgggtcaaat |
39813347 |
T |
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| Q |
203 |
tcaatgtaagcaaataatttgacctcgagagtcctgtt |
240 |
Q |
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| T |
39813346 |
tcaatgtaagcaaataatttgacctcgaaagtcctgtt |
39813309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 39816423 - 39816335
Alignment:
| Q |
14 |
ttattctactgtcatggctattatgtactatttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacac |
102 |
Q |
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| T |
39816423 |
ttattctactgccatggctgttatgtaccatttacctctctgtgttagagactttctttttaagaaagcaatgaaatgttgatctacac |
39816335 |
T |
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