View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14966_high_5 (Length: 260)
Name: NF14966_high_5
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14966_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 52699856 - 52700090
Alignment:
| Q |
4 |
ggttgaaaagacgagacgggctgaatacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagttttt |
103 |
Q |
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| T |
52699856 |
ggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagttttt |
52699955 |
T |
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| Q |
104 |
acctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagcattagtagtgcagtgtttttgtctgaggttggaatcggaagtt |
203 |
Q |
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| T |
52699956 |
acctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagtt |
52700055 |
T |
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| Q |
204 |
ggttgagtagtgctttggtgaagactgttaccgct |
238 |
Q |
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| T |
52700056 |
ggttgagtagtgctttggtgaagactgttaccgct |
52700090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 52714173 - 52714356
Alignment:
| Q |
44 |
agcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcga |
143 |
Q |
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| T |
52714173 |
agcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaa |
52714272 |
T |
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| Q |
144 |
cggacgggacaaaaagcattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaaga |
227 |
Q |
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| T |
52714273 |
cggatgggacaaaaagtattagtagtgcaatgtttttgtctaagattggaattggaagttggttaagtactgctttggtgaaga |
52714356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 52723195 - 52723378
Alignment:
| Q |
44 |
agcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcga |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| || |||||||| | |
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| T |
52723195 |
agcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaa |
52723294 |
T |
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| Q |
144 |
cggacgggacaaaaagcattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaaga |
227 |
Q |
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| T |
52723295 |
cagatgggacaaaaagtattagtagtgcaatgtttttgtctctgattggaattggaagttggttaagtactgctttggtgaaga |
52723378 |
T |
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