View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14966_high_6 (Length: 237)
Name: NF14966_high_6
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14966_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 32614893 - 32614673
Alignment:
| Q |
2 |
ataagttcaaataaactaattcaaacaatatttattctgttgagaaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccat |
101 |
Q |
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| T |
32614893 |
ataagttcaaataaactaattcaaacaacatttattttgttgataaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccat |
32614794 |
T |
|
| Q |
102 |
cctcagctaggatcttttgtagagtttgcttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatgtattccagtcttgttttctctat |
201 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32614793 |
cctcagttaggatcttttgtagagtttgcttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatgtattccagtcttgttttctctat |
32614694 |
T |
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| Q |
202 |
ctgaggtttaaagagctgcat |
222 |
Q |
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||||||||||||||||||||| |
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| T |
32614693 |
ctgaggtttaaagagctgcat |
32614673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 32633481 - 32633301
Alignment:
| Q |
41 |
ttgagaaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcctcagctaggatcttttgtagagtttgcttttcaacac |
140 |
Q |
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||||||||||||||||||||| ||||| ||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
32633481 |
ttgagaaatgttccatgaaatatgactcaccgatttatggcatctacatcaggagttccatcctcagttaggatcgtttgtagagtttgcttttcaacac |
32633382 |
T |
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| Q |
141 |
gttggaaaattcttaaaattaaatcatcatgctttatgtattccagtcttgttttctctatctgaggtttaaagagctgca |
221 |
Q |
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||| || ||||||||||| || |||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
32633381 |
gttcaaagattcttaaaatcaattcatcatgttttatgtattctaatcttgttttctctatctgaggtttaaagatctgca |
32633301 |
T |
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