View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14966_low_10 (Length: 210)
Name: NF14966_low_10
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14966_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 25740486 - 25740324
Alignment:
| Q |
16 |
caaaaataaatccaccgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740486 |
caaaaataaatccaccgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgt |
25740387 |
T |
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| Q |
116 |
tccttgtcctctatggtttgtaccaagtttatggtaattccactgtcgtgatactttaatatg |
178 |
Q |
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| T |
25740386 |
tccttgtcctctatggtttgtaccaagtttatggtaattccactgtcgtgacactttaatatg |
25740324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 25755219 - 25755084
Alignment:
| Q |
24 |
aatccaccgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttccttgtc |
123 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| | || |
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| T |
25755219 |
aatccatcgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatactttcctgagaagacattaaagcatggtgatgttcttcatc |
25755120 |
T |
|
| Q |
124 |
ctctatggtttgtaccaagtttatggtaattccact |
159 |
Q |
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| T |
25755119 |
ctgtatggtttgtaccaagtttatggtaattccact |
25755084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 25732783 - 25732627
Alignment:
| Q |
18 |
aaaataaatccaccgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttc |
117 |
Q |
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| T |
25732783 |
aaaataaatccaccgacaagtttagagtttgggatattttgtctgaatgatagaagcatcaaatacttccctgaggagacgtcaaagcatggtgaggttc |
25732684 |
T |
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| Q |
118 |
c---ttgtcctctatggtttgtaccaagtttatggtaattccactgtcgtgatactt |
171 |
Q |
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| T |
25732683 |
cttattatcctttatggtttgtaccaagtttatggtaattcctctgtcttgacactt |
25732627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 25763168 - 25763029
Alignment:
| Q |
22 |
taaatccaccgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttccttg |
121 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||| ||||| ||||||||| | |||||||||||||||||| |
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| T |
25763168 |
taaatccaccgttaagtttagagtttgggatgttttgtttgaatggtagctgcatcatatacctccctaaggagacattacagcatggtgatgttcctta |
25763069 |
T |
|
| Q |
122 |
tcctctatggtttgtaccaagtttatggtaattccactgt |
161 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
25763068 |
tcctttatggtttgtaccaagtttatggtaattccactgt |
25763029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 25746657 - 25746519
Alignment:
| Q |
24 |
aatccaccgacaagtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttccttgtc |
123 |
Q |
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||||||| || |||||| ||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||| || || |
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| T |
25746657 |
aatccactgagaagttttgaggttgggatgttttgtttgaatgatagcagggtcaaatacggccctatggagacatcaaagcatggttatgttctttatc |
25746558 |
T |
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| Q |
124 |
ctctatggtttgtaccaagtttatggtaattccactgtc |
162 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
25746557 |
ctttatggtttgtaccaagtttatggtaattccactgtc |
25746519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 30154514 - 30154648
Alignment:
| Q |
37 |
gtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttccttgtcctctatggtttgt |
136 |
Q |
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|||||| ||| |||||||||||||||| | ||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
30154514 |
gtttagtgttggggatgttttgtttgactaatagcagcatcaaatactttcctgtggagacatcgaagcatggtgatgtcccttgtcctttatggtttgt |
30154613 |
T |
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| Q |
137 |
accaagtttatggtaattccactgtcgtgatactt |
171 |
Q |
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|||||||||||||||||||||||||| ||| |||| |
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| T |
30154614 |
accaagtttatggtaattccactgtcttgacactt |
30154648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 30156107 - 30156241
Alignment:
| Q |
37 |
gtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttccttgtcctctatggtttgt |
136 |
Q |
| |
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|||||||||| || ||||||||||||| |||||||||| |||||||||| |||| ||||||||| |||||||| ||||| |||| |||| |||||||||| |
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| T |
30156107 |
gtttagagttgggaatgttttgtttgactgatagcagcgtcaaatactttcctgtggagacatcgaagcatggcgatgtcccttatcctttatggtttgt |
30156206 |
T |
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| Q |
137 |
accaagtttatggtaattccactgtcgtgatactt |
171 |
Q |
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|||||||||||||||||||||||||| ||| |||| |
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| T |
30156207 |
accaagtttatggtaattccactgtcttgacactt |
30156241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 30149775 - 30149897
Alignment:
| Q |
37 |
gtttagagtttgggatgttttgtttgaatgatagcagcatcaaatacttccctgaggagacatcaaagcatggtgatgttccttgtcctctatggtttgt |
136 |
Q |
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|||||||| | |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||| || ||||| |||| |||| |||||||||| |
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| T |
30149775 |
gtttagaggtggggatgttttgtttgactgatagcagcatcaaatactttcctgtggagacatcgaagcagggcgatgtcccttatcctttatggtttgt |
30149874 |
T |
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| Q |
137 |
accaagtttatggtaattccact |
159 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
30149875 |
accaagtttttggtaattccact |
30149897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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