View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14966_low_2 (Length: 367)
Name: NF14966_low_2
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14966_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6017185 - 6017414
Alignment:
| Q |
1 |
tcgctttcttgtaaactcaaactttgtaatgattatttagtagactacttgatctttcaattgattaaaaggcttcgatgaagaatacaatgatcattta |
100 |
Q |
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| T |
6017185 |
tcgctttcttgtaaattcaaactttgtaatgatcatttagtagactacttgatctttcaattgataaaaaggcttcgatgaagaatacaatgatcattta |
6017284 |
T |
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| Q |
101 |
gtagactacttgatcttcaaatatttttctcaaagtcattgtcacttacccggacaatgctttgatgaatgttgttgagacaattttctcagtatactgc |
200 |
Q |
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| T |
6017285 |
gtagactacttgatcttcaaatatttttctcatagtcattgtcacttacaaggacaatgctttgatgaatgttgttgagacaattttttcagtgtactgc |
6017384 |
T |
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| Q |
201 |
tctattgtatgagtatcacatctttaaaaa |
230 |
Q |
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| T |
6017385 |
tctattgtatgagtatcacatctttaaaaa |
6017414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 12839993 - 12840064
Alignment:
| Q |
153 |
gacaatgctttgatgaatgttgttgagacaattttctc--agtatactgctctattgtatgagtatcacatc |
222 |
Q |
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| T |
12839993 |
gacaatgctttgatgaatgttgttgatacaattttcccgaaggatactgctctgttgtgtgagtttcacatc |
12840064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 16041784 - 16041737
Alignment:
| Q |
131 |
caaagtcattgtcacttacccggacaatgctttgatgaatgttgttga |
178 |
Q |
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| T |
16041784 |
caaagtcattgtcattgatcgggacaatgctttgatgaatgttgttga |
16041737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 31010662 - 31010717
Alignment:
| Q |
263 |
ctgatgttgcggatgctcatgctgaggctccctcatgatgttgtgtaaggtccacta |
319 |
Q |
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| T |
31010662 |
ctgatgttgaggttgctcataccgaggctcc-tcatgatgttgtgtagggtccacta |
31010717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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