View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14966_low_3 (Length: 330)

Name: NF14966_low_3
Description: NF14966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14966_low_3
NF14966_low_3
[»] chr7 (9 HSPs)
chr7 (145-316)||(33416476-33416647)
chr7 (1-118)||(33410483-33410600)
chr7 (1-118)||(33424385-33424502)
chr7 (1-118)||(33416332-33416449)
chr7 (165-316)||(33424566-33424718)
chr7 (9-118)||(33428087-33428196)
chr7 (165-316)||(33410664-33410803)
chr7 (1-90)||(33436537-33436626)
chr7 (215-316)||(33427877-33427978)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-61)||(5180-5240)
[»] chr1 (4 HSPs)
chr1 (17-100)||(24985049-24985132)
chr1 (17-100)||(24990879-24990962)
chr1 (267-316)||(24984803-24984852)
chr1 (267-316)||(24990633-24990682)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 145 - 316
Target Start/End: Original strand, 33416476 - 33416647
Alignment:
Q  145 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416476 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 33416575  T
Q  245 acatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33416576 acatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccattgagtg 33416647  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33410483 - 33410600
Alignment:
Q  1 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410483 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 33410582  T
Q  101 cttgaagggtcatagttg 118  Q
    ||||  || |||||||||    
T  33410583 cttgccggatcatagttg 33410600  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33424385 - 33424502
Alignment:
Q  1 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33424385 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 33424484  T
Q  101 cttgaagggtcatagttg 118  Q
    ||||  || |||||||||    
T  33424485 cttgccggatcatagttg 33424502  T

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Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33416332 - 33416449
Alignment:
Q  1 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||    
T  33416332 ttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgc 33416431  T
Q  101 cttgaagggtcatagttg 118  Q
    ||||||||||||||||||    
T  33416432 cttgaagggtcatagttg 33416449  T

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Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 33424566 - 33424718
Alignment:
Q  165 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttattttttcc-tttt 263  Q
    |||||||||||||||||  || | || |||||| |||||| ||| |||| ||| ||||||||||||||||||||||||| | |||| |||||||| ||||    
T  33424566 acaaaagttaattataatcataatatgcactaactagttatgcagttgattataaactaaataaacttgaaaccaaatgaaaatttgttttttccctttt 33424665  T
Q  264 acatacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtg 316  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  33424666 acatacctaagttgtctccaacacggaaaactttgtcttgagcccattgagtg 33424718  T

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Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 33428196 - 33428087
Alignment:
Q  9 gaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgaagg 108  Q
    |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||| |||||| || ||||||||||||||||| ||||||||    
T  33428196 gaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgtgccgttcactttgaaaacattgtgtcttgaagg 33428097  T
Q  109 gtcatagttg 118  Q
    ||||||||||    
T  33428096 gtcatagttg 33428087  T

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Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 33410664 - 33410803
Alignment:
Q  165 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttattttttcctttta 264  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||               |||||||||| |||| |||||||||||||    
T  33410664 acaaaagttaattataattatgagatacactaattagttaaacaattgaatatgaa---------------accaaatggatatttgttttttcctttta 33410748  T
Q  265 ---catacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtg 316  Q
       ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33410749 ttacatacctagattgtctccaacacgaaaaactttgtcttgagcccactgagtg 33410803  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33436537 - 33436626
Alignment:
Q  1 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaa 90  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||   | ||| ||||| ||||| ||||||||    
T  33436537 ttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaagtgcagtccttaaaaagtgtaccattcactttgaa 33436626  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 316
Target Start/End: Complemental strand, 33427978 - 33427877
Alignment:
Q  215 tatgaactaaataaacttgaaaccaaatggacatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccactgag 314  Q
    |||||||||||||||||| |||||||||||| | |  | || |||||||||||||| || ||||| ||||||||||||||||||||||  ||||| ||||    
T  33427978 tatgaactaaataaactttaaaccaaatggaaaatcgtattatccttttacataccaagattgtcaccaacacgaaaaactttgtcttacgcccattgag 33427879  T
Q  315 tg 316  Q
    ||    
T  33427878 tg 33427877  T

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Target: scaffold0262 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5240 - 5180
Alignment:
Q  1 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5240 ttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcag 5180  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 24985132 - 24985049
Alignment:
Q  17 tcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 100  Q
    |||||||| || |||||||||||||||| || ||||||||||||||||||||||||| | ||||  |||||||| |||||||||    
T  24985132 tcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacattgtgc 24985049  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 24990962 - 24990879
Alignment:
Q  17 tcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgc 100  Q
    |||||||| || |||||||||||||||| || ||||||||||||||||||||||||| | ||||  |||||||| |||||||||    
T  24990962 tcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacattgtgc 24990879  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 24984852 - 24984803
Alignment:
Q  267 tacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtg 316  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  24984852 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtg 24984803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 24990682 - 24990633
Alignment:
Q  267 tacctaggttgtctccaacacgaaaaactttgtcttgagcccactgagtg 316  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| ||||||    
T  24990682 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtg 24990633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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