View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14967_high_1 (Length: 528)

Name: NF14967_high_1
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14967_high_1
NF14967_high_1
[»] chr2 (18 HSPs)
chr2 (12-509)||(5525922-5526428)
chr2 (47-210)||(29109179-29109344)
chr2 (57-216)||(31111411-31111572)
chr2 (16-112)||(3690083-3690174)
chr2 (47-161)||(27866665-27866780)
chr2 (47-194)||(3919872-3920021)
chr2 (64-210)||(12893947-12894095)
chr2 (48-112)||(37630434-37630498)
chr2 (47-161)||(38607020-38607135)
chr2 (16-114)||(33037015-33037113)
chr2 (54-114)||(44018966-44019026)
chr2 (51-160)||(35954766-35954877)
chr2 (47-114)||(7772078-7772145)
chr2 (49-113)||(35961755-35961819)
chr2 (49-92)||(10721965-10722008)
chr2 (49-103)||(30906877-30906930)
chr2 (133-210)||(30906947-30907024)
chr2 (47-114)||(4240761-4240828)
[»] chr3 (18 HSPs)
chr3 (47-210)||(44471021-44471186)
chr3 (50-210)||(30554559-30554721)
chr3 (51-217)||(26757590-26757758)
chr3 (20-159)||(779479-779629)
chr3 (16-208)||(46892610-46892794)
chr3 (47-160)||(28550497-28550612)
chr3 (55-182)||(27524049-27524178)
chr3 (16-159)||(44285615-44285755)
chr3 (47-159)||(44682014-44682129)
chr3 (12-163)||(11503300-11503461)
chr3 (47-114)||(54246534-54246601)
chr3 (47-127)||(26918459-26918539)
chr3 (48-98)||(23659502-23659552)
chr3 (46-153)||(13870260-13870369)
chr3 (52-210)||(12937750-12937910)
chr3 (47-102)||(23307059-23307114)
chr3 (16-53)||(33231488-33231525)
chr3 (158-210)||(33231582-33231634)
[»] chr4 (7 HSPs)
chr4 (47-212)||(53393172-53393339)
chr4 (16-130)||(42141333-42141448)
chr4 (49-210)||(8606151-8606314)
chr4 (57-210)||(23107938-23108093)
chr4 (33-161)||(13207384-13207509)
chr4 (133-215)||(39839072-39839154)
chr4 (55-112)||(8056816-8056872)
[»] chr6 (11 HSPs)
chr6 (16-184)||(23300455-23300625)
chr6 (16-210)||(7176465-7176661)
chr6 (49-155)||(11846299-11846407)
chr6 (55-184)||(23301441-23301572)
chr6 (47-209)||(9826742-9826906)
chr6 (49-208)||(2454128-2454289)
chr6 (47-210)||(26186698-26186863)
chr6 (54-154)||(23585913-23586015)
chr6 (47-107)||(5076238-5076298)
chr6 (55-100)||(11971526-11971571)
chr6 (84-159)||(32613900-32613977)
[»] chr7 (19 HSPs)
chr7 (47-220)||(48070608-48070783)
chr7 (19-219)||(27226892-27227094)
chr7 (16-210)||(25545185-25545389)
chr7 (49-216)||(3996962-3997130)
chr7 (51-209)||(12471755-12471914)
chr7 (47-164)||(31136195-31136309)
chr7 (16-112)||(12470987-12471091)
chr7 (47-112)||(22331994-22332059)
chr7 (47-110)||(12470240-12470303)
chr7 (51-114)||(44523693-44523755)
chr7 (55-163)||(46265328-46265438)
chr7 (58-107)||(1194546-1194595)
chr7 (55-163)||(2923004-2923114)
chr7 (47-92)||(35738150-35738195)
chr7 (47-95)||(21378581-21378628)
chr7 (55-113)||(2197695-2197753)
chr7 (59-103)||(7995058-7995102)
chr7 (137-185)||(12013040-12013088)
chr7 (50-109)||(19602331-19602390)
[»] chr8 (12 HSPs)
chr8 (16-161)||(3767634-3767789)
chr8 (12-215)||(16570836-16571048)
chr8 (16-216)||(9505013-9505224)
chr8 (47-210)||(32321803-32321968)
chr8 (58-161)||(9040470-9040570)
chr8 (57-161)||(34760833-34760940)
chr8 (12-161)||(25456106-25456265)
chr8 (12-113)||(25808259-25808368)
chr8 (59-114)||(7956369-7956424)
chr8 (47-113)||(14684387-14684453)
chr8 (47-112)||(3555435-3555500)
chr8 (135-216)||(25344219-25344300)
[»] chr1 (12 HSPs)
chr1 (47-208)||(8414595-8414758)
chr1 (55-216)||(512951-513114)
chr1 (47-153)||(11911646-11911754)
chr1 (49-210)||(27320483-27320646)
chr1 (65-213)||(8083987-8084138)
chr1 (57-210)||(16584891-16585046)
chr1 (16-92)||(32678434-32678518)
chr1 (133-214)||(32678525-32678606)
chr1 (47-112)||(44581820-44581885)
chr1 (58-103)||(11620031-11620076)
chr1 (49-114)||(17530706-17530771)
chr1 (57-160)||(25785805-25785910)
[»] scaffold0564 (1 HSPs)
scaffold0564 (16-215)||(6310-6511)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-112)||(344328-344423)
[»] scaffold0590 (1 HSPs)
scaffold0590 (47-161)||(8220-8336)
[»] chr5 (7 HSPs)
chr5 (79-216)||(31895894-31896033)
chr5 (16-197)||(1498172-1498363)
chr5 (51-210)||(17770216-17770377)
chr5 (49-208)||(29126089-29126250)
chr5 (133-210)||(19947712-19947789)
chr5 (16-128)||(7239257-7239378)
chr5 (16-128)||(7244433-7244554)
[»] scaffold0070 (2 HSPs)
scaffold0070 (135-216)||(33727-33808)
scaffold0070 (12-161)||(13799-13958)


Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Complemental strand, 5526428 - 5525922
Alignment:
Q  12 ataatactaaaatggggagtgagattagcatcggttcggttc--------tttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5526428 ataatactaaaatggggagtgagattagcatcggttcggttcatctgttctttggatctcaaaattaaaaactgagaaccgaaccaaactagatcggttt 5526329  T
Q  104 aggttggttcgttcagttttgaaccga-caaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggacca 202  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  5526328 aggttggttcgttcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttctttggttttgtccggacca 5526229  T
Q  203 cttacacctctaatcatgtgggacatcatacacatcttcaatcagaaatgnnnnnnnatatatttggccaatgtttggaatgtatgaattgaaatatatg 302  Q
    |||||||| ||| |||| | ||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  5526228 cttacaccactagtcatataggacatcatacacatcttcaatctgaaatgtttttttatatatttggccaatgtttggaatgtatgaattgaaatatatg 5526129  T
Q  303 aagtgtacctttttgttaaaggttccactcattctaaaaactatacattctcatgcttgagcctcnnnnnnncctgttagactaggcatgatatgatatg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  5526128 aagtgtacctttttgttaaaggttccactcattctaaaaactatacattctcatgcttgagcctctttttttcctgttagactaggcatgatatgatatg 5526029  T
Q  403 agctaacttttgtcttggtagtcacatggtgatgaataaaatatttgtaatttatactatatagtttcctatacatcactctttttcatatctcatgagg 502  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5526028 agctaacttttgtcttggtagtcacatggtgatgaatagaatatttgtaatttataccatatagtttcctatacatcactctttttcatatctcatgagg 5525929  T
Q  503 tcctttg 509  Q
    |||||||    
T  5525928 tcctttg 5525922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 29109179 - 29109344
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcgg 144  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| ||||||||| | || ||||||||||||    
T  29109179 tcggttctttggatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcgg 29109278  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||  ||||| ||||||||   |||||||||||  ||||||   ||||||||| ||||||||||||    
T  29109279 ataatttttcagtttggttcggtttggattttcagtttcatcagttttgtccgaaccacttacacc 29109344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 31111572 - 31111411
Alignment:
Q  57 ggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccga-caaaacaaggtcggatacgttttc 154  Q
    |||||||||||| |||||||  ||||| |||||||||||||||||||   ||||||| | |||||||  |||||| | |||||||||||||||  |||||    
T  31111572 ggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaaacaaggtcggatattttttc 31111473  T
Q  155 ggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaat 216  Q
    ||||||||| |||||||||||||| |||| |||||||||||   |||||||||||| |||||    
T  31111472 ggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacacccctaat 31111411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 3690083 - 3690174
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    |||||||||||||||| || |||||||||||||      || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3690083 tactaaaatggggagtaaggttagcatcggttca-----ttagatctcaaaattaaaaatcgagaaccgaaccaaactagatcggtttaggttggtt 3690174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 27866780 - 27866665
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcgg 144  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||| |||| ||||||||||| || || |||||||||    
T  27866780 tcggttcttgggatctcaaaattaaaaaccgagaatcgaaccaaactcgatcaatttaagttggttcagttcggttttgaaccgaaccaagcaaggtcgg 27866681  T
Q  145 atacgttttcggtttgg 161  Q
    |||| ||||||||||||    
T  27866680 atac-ttttcggtttgg 27866665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 3919872 - 3920021
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcgg 144  Q
    |||||||||| |||||||||||||||||   |||||| ||||||||||||||||||||| ||||||| |||| ||||||||||  || |||||| ||||     
T  3919872 tcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaaaccaaacaaagtcga 3919971  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgt 194  Q
    || | ||||||||||| || | |||| ||||| | |||||||| ||||||    
T  3919972 atgctttttcggtttgattcagtttgaattttaggtttcattggttttgt 3920021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 64 - 210
Target Start/End: Original strand, 12893947 - 12894095
Alignment:
Q  64 aaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccga-caaaacaaggtcggatacgttttcggtttgg 161  Q
    |||||||||||| |||||| ||||||||  || ||||||||| |||||||| ||  |||||||||||| | |||||||||||||||| |||| |||||||    
T  12893947 aaaattaaaaactgagaactgaaccaaagaagttcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttgg 12894046  T
Q  162 tttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    || | |||||| ||| |||||| ||| ||||||| | |||||| |||||    
T  12894047 ttcagtttggacttttgatttcgttggttttgtctgaaccactcacacc 12894095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 37630498 - 37630434
Alignment:
Q  48 cggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  37630498 cggttcattggatctcaaaattaaaaaccgagaactgaaccaaactagatcagtttaggttggtt 37630434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 38607135 - 38607020
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccgacaaaacaaggtcgga 145  Q
    |||||| | ||||||||||||| ||||||| ||||||||||||||| || || |||||| ||||||| |||| |||||||| |||  |||||||||||||    
T  38607135 tcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaacaaacaaggtcgga 38607036  T
Q  146 tacgttttcggtttgg 161  Q
    ||  ||||||||||||    
T  38607035 tatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 33037015 - 33037113
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    ||||||||||| ||||||  ||||||||| ||| |||||||| || ||||| ||||||| | ||||||||||||||||| ||||||||| |||||||||    
T  33037015 tactaaaatggagagtgaagttagcatcgattcagttctttgaatttcaaatttaaaaatcaagaaccgaaccaaactaaatcggtttaagttggttcg 33037113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 44018966 - 44019026
Alignment:
Q  54 tttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  44018966 tttggatctcaaaattaaaatccgagaaccgaaccaaactaaatcggtttaagttggttcg 44019026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 35954766 - 35954877
Alignment:
Q  51 ttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcggatac 148  Q
    |||||||||||||||||| |||||| ||||||| ||||||| |||||||  |||||||||||| ||||  |||| ||||  |||||||||||||||||||    
T  35954766 ttctttggatctcaaaatcaaaaactgagaaccaaaccaaattagatcgagttaggttggttcagttcgattttaaaccaaacaaaacaaggtcggatac 35954865  T
Q  149 gttttcggtttg 160  Q
     |||||| ||||    
T  35954866 tttttcgatttg 35954877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 7772078 - 7772145
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    ||||||||||  |||| ||||| ||||||| | |||||||||||||||||||||||||| ||||||||    
T  7772078 tcggttctttcaatctgaaaatcaaaaaccaaaaaccgaaccaaactagatcggtttagcttggttcg 7772145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 35961755 - 35961819
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc 113  Q
    |||||||| ||||||||||| |||||| |||||||||| |||| ||||||| || ||||||||||    
T  35961755 ggttctttagatctcaaaatcaaaaactgagaaccgaatcaaattagatcgattaaggttggttc 35961819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 10722008 - 10721965
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaac 92  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  10722008 ggttcattagatctcaaaattaaaaaccgagaaccgaaccaaac 10721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 30906877 - 30906930
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||    
T  30906877 ggttctttggatctcaaaatt-aaatccgagaaccgaatcaaactatatcggttt 30906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 30906947 - 30907024
Alignment:
Q  133 aaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    ||||||||||| | || |||| ||||||||| | | |||||||||| |||||| ||||||||||  ||||||||||||    
T  30906947 aaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacc 30907024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 4240828 - 4240761
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    |||| ||||||||||||||||||||||  | |||||| ||| |||||| |||| ||| ||||||||||    
T  4240828 tcggatctttggatctcaaaattaaaattcaagaaccaaactaaactatatcgattttggttggttcg 4240761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 44471186 - 44471021
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttgg-ttcgttcagttttgaaccg-acaaaacaaggtcgg 144  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| || |||| ||||||||||| || ||||||||||||    
T  44471186 tcggttctttggatttcaaaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcgg 44471087  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||| ||||||||||||||   ||||||||||||||||||| | ||||||||| ||||||||||||    
T  44471086 atacattttcggtttggttcggtttggattttcgatttcatcggttttgtccgaaccacttacacc 44471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 30554559 - 30554721
Alignment:
Q  50 gttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggata 147  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||  |||||||||| || |||||||||||||||    
T  30554559 gttctttggatatcaaaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggata 30554658  T
Q  148 cgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    | |||||||||| | |  ||||||||||||| |||||| |||||||| || |||| |||||||    
T  30554659 ctttttcggtttagctcgatttggattttcggtttcatcgattttgttcgaaccatttacacc 30554721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 26757758 - 26757590
Alignment:
Q  51 ttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccga-caaaacaaggtcggatac 148  Q
    ||||||||||||||||||||||| || ||||||||||||| ||| |||| |||||||||||||| ||||||||| |||  | | |||||| |||| ||||    
T  26757758 ttctttggatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatac 26757659  T
Q  149 gttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaatc 217  Q
     |||||| ||| |||| |||||||||||||||||||||| ||||||||  |||||||||||| ||||||    
T  26757658 tttttcgattttgtttgatttggattttcgatttcattggttttgtccaaaccacttacacccctaatc 26757590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 779479 - 779629
Alignment:
Q  20 aaaatggggagtgagattagcatcggttcggttc--------tttggatctcaaaa-ttaaaaaccgagaaccgaaccaaactagatcggtttaggttgg 110  Q
    ||||||| ||||||||||||||||||||||||||        ||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  779479 aaaatggagagtgagattagcatcggttcggttcatcggttctttggatttcaaaaattaaaaaccaagaaccgaaccaaactagattggtttaggttgg 779578  T
Q  111 ttcg-ttcagttttgaaccg-acaaaacaaggtcggatacgttttcggttt 159  Q
    |||| ||| ||||||||||| || ||||||||| |||||| ||||||||||    
T  779579 ttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 46892794 - 46892610
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgt 115  Q
    |||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||     ||||||||     
T  46892794 tactaaaatgaggagtgaggttagcatcggtttggttcattggatctcaaaattaaaaaccgagaatcgaaccaaactagattggt-----ttggttcg- 46892701  T
Q  116 tcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttaca 208  Q
       ||||| ||||| || |||||||||||||||  ||||||||||||||   |||| |||||   |||||| | ||||| ||| ||||||||||    
T  46892700 ---gttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccacttaca 46892610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 28550612 - 28550497
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcgg 144  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||| | ||||||||| || |||||| ||  |    
T  28550612 tcggttctttagatctcaaaattaaaaaccgagaatcgaaccaaactagatccgtttaagttggttcggttcggatttgaaccgaaccaaacaaagttag 28550513  T
Q  145 atacgttttcggtttg 160  Q
    |||| |||||||||||    
T  28550512 atactttttcggtttg 28550497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 27524178 - 27524049
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccga-caaaacaaggtcggatacgttt 152  Q
    |||||||| |||||||||||| |||||||||||||||| || ||| ||||| |||||| | ||  ||||||| |||| | ||||||||||| |||| |||    
T  27524178 ttggatctgaaaattaaaaacagagaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttt 27524079  T
Q  153 tcggtttggtttaatttggattttcgattt 182  Q
    ||||||||||||| |||||| |||||||||    
T  27524078 tcggtttggtttagtttggactttcgattt 27524049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 44285755 - 44285615
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-g 114  Q
    ||||||||||||||||||| ||| ||     | ||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |    
T  44285755 tactaaaatggggagtgaggttaaca-----taggttctttgaatttcaaaattaaaaaccgagaactgaaccaaactaaatcgatttaggttggttcgg 44285661  T
Q  115 ttcagttttgaaccg-acaaaacaaggtcggatacgttttcggttt 159  Q
    ||| ||||||||||| || ||||||||||  |||  ||||||||||    
T  44285660 ttcggttttgaaccgaaccaaacaaggtcatatattttttcggttt 44285615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 44682014 - 44682129
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttagg-ttggttc-gttcagttttgaaccg-acaaaacaaggtcg 143  Q
    ||||||| | |||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||| ||||||| ||| || |||||||||||    
T  44682014 tcggttcatcggatttcaaaattaaaaaccaagaaccaaaccaaactagatcggtttaggtttggttcagttcggttttgatccgaaccaaacaaggtcg 44682113  T
Q  144 gatacgttttcggttt 159  Q
     |||| ||||||||||    
T  44682114 tatactttttcggttt 44682129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 11503300 - 11503461
Alignment:
Q  12 ataatactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    |||||| |||||||||||||||| ||||||| |||||||||  |        ||||||||||||| ||||| |||||||| |||||||  ||||||||||    
T  11503300 ataatagtaaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggttt 11503399  T
Q  104 aggttggttc-gttcagttttgaacc-gacaaaacaaggtcggatacgttttcggtttggtt 163  Q
     | ||||||| |||| ||||||||||  || | |||||||||||||| |||| |||||||||    
T  11503400 cgattggttcggttcggttttgaaccttaccagacaaggtcggatacatttttggtttggtt 11503461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 54246601 - 54246534
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||   |||||||| ||||||||||    
T  54246601 tcggttctttggatctcaaaattaaaaattgagaaccgaaccaaacattatcggtttgggttggttcg 54246534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 26918459 - 26918539
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgttcagttttgaac 127  Q
    |||| |||||| ||||||||||||||||  |||||| |||||||||||||||  |||||||||||||| |  |||||||||    
T  26918459 tcggctctttgaatctcaaaattaaaaattgagaactgaaccaaactagatcaatttaggttggttcggttggttttgaac 26918539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 23659552 - 23659502
Alignment:
Q  48 cggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatc 98  Q
    |||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  23659552 cggttcattggatctcaaaattaaaaaccaagaaccgaatcaaactagatc 23659502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 13870369 - 13870260
Alignment:
Q  46 ttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccg-acaaaacaaggtcg 143  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||| | | |||||||||  |||| | ||| | ||||||||| || | |||||||||    
T  13870369 ttcggttctttggatctcaaaatcaaaaaccaagaaccgaatcaaacaataccggtttaggccggtttgattcggctttgaaccgaaccagacaaggtcg 13870270  T
Q  144 gatacgtttt 153  Q
    ||||| ||||    
T  13870269 gatacttttt 13870260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 12937750 - 12937910
Alignment:
Q  52 tctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaa-ccgacaaaacaaggtcggatacg 149  Q
    ||||||||||| || || |||||  ||||||||||||||| | ||||||||||||||||||| |||| ||||| || |  || ||||||  ||  ||||     
T  12937750 tctttggatcttaagatgaaaaattgagaaccgaaccaaaattgatcggtttaggttggttcggttcggttttcaatcaaaccaaacaaaatctaatact 12937849  T
Q  150 ttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||||| ||| |||   |||||||||||| |||||| |||||| |||| | ||||||||||    
T  12937850 ttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacc 12937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 23307059 - 23307114
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtt 102  Q
    |||||||||||||| ||||||| |||||| || | |||||||||||||||||||||    
T  23307059 tcggttctttggatatcaaaataaaaaactgaaagccgaaccaaactagatcggtt 23307114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 33231488 - 33231525
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttc 53  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  33231488 tactaaaatggggagtgaggttagcatcggttcggttc 33231525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 33231582 - 33231634
Alignment:
Q  158 ttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||||||  |||| ||||||| |||||| ||||||||||| ||||||||||||    
T  33231582 ttggtttggtttgaattttcggtttcatcgattttgtccgaaccacttacacc 33231634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 53393172 - 53393339
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcgg 144  Q
    ||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||    
T  53393172 tcggttcattggatttcaaagttataaaccgagaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcgg 53393271  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctc 212  Q
    |||| |||| |||||||||   |||||||||||| |||||| | ||||||||| ||||||||||||||    
T  53393272 atacttttttggtttggttcggtttggattttcggtttcatcggttttgtccgaaccacttacacctc 53393339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 42141448 - 42141333
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-g 114  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||| |    
T  42141448 tactaaaatgaggagtgagtttagcatcggttcggttctttggatctcaaaattaaaaaccaagaaccgaaccaaagtagatcgatttaggtttgttcag 42141349  T
Q  115 ttcagttttgaaccga 130  Q
    ||| ||||||||||||    
T  42141348 ttcggttttgaaccga 42141333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 8606151 - 8606314
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccga-caaaacaaggtcggat 146  Q
    ||||| |||||||||||||| |||||| |||||||||||||| | |||||||||||| |||||||| ||  |||||||||||| | |||||| || ||||    
T  8606151 ggttccttggatctcaaaatgaaaaactgagaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggat 8606250  T
Q  147 acgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    || |||||||||||||||||||| || | ||  |||| | | ||||||||| ||||||||||||    
T  8606251 actttttcggtttggtttaattttgactatcagtttcgtcggttttgtccgaaccacttacacc 8606314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 23107938 - 23108093
Alignment:
Q  57 ggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccga-caaaacaaggtcggatacgttttc 154  Q
    ||||||| |||| |||||||  ||| | ||||||||||||||||||| | ||||||||  || ||||  |||| | | |||||||||||||||  ||| |    
T  23107938 ggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaaacaaggtcggatatttttcc 23108037  T
Q  155 ggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
     ||||||||   |||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  23108038 tgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacacc 23108093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 13207384 - 13207509
Alignment:
Q  33 agattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-a 130  Q
    |||||| |||||| || ||||||||||||||||||| ||||| |||      ||||||||||||| || |||||||||||| | ||   ||||||||| |    
T  13207384 agattaacatcggatcagttctttggatctcaaaataaaaaatcga-----taaccaaactagattggattaggttggttcagatcgactttgaaccgaa 13207478  T
Q  131 caaaacaaggtcggatacgttttcggtttgg 161  Q
    | ||||||| || ||||| ||||||||||||    
T  13207479 ccaaacaagatcagatactttttcggtttgg 13207509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 39839072 - 39839154
Alignment:
Q  133 aaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaa 215  Q
    ||||||||||  |||| ||||| ||||| |||  |||||||||||| |||||| | ||| ||||| |||||||||||| ||||    
T  39839072 aaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacacccctaa 39839154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 8056872 - 8056816
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    |||||||||||||| |||| | |||||||||||||||| || ||||||||| ||||||    
T  8056872 ttggatctcaaaatgaaaatc-gagaaccgaaccaaacaagttcggtttagattggtt 8056816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 23300625 - 23300455
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-g 114  Q
    ||||||||||| ||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |    
T  23300625 tactaaaatggagagtgaagttagcatcggttcggtttgttggatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcgg 23300526  T
Q  115 ttcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttca 184  Q
    ||||||||||||||| || |||||||||||  | | ||||||||||||||   |||| ||||||| |||||    
T  23300525 ttcagttttgaaccgaaccaaacaaggtcgatttctttttcggtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 7176465 - 7176661
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-g 114  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |    
T  7176465 tactaaaatggggagtgaggttagcatctgttcggttcattggatctcaaaataaaaaactgataaccgaaccaaactagatcggtttaggttggttcgg 7176564  T
Q  115 ttcagttttgaacc-gacaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||  |||||||||  || ||||||||| |||||| ||||||| ||||||   || |  |||||| |||||| | ||||||||| | ||||||||||    
T  7176565 ttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttcggtttcatcggttttgtccgaaacacttacacc 7176661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 11846407 - 11846299
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcggat 146  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||  || ||||||||||||||    
T  11846407 ggttcattggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaagttggttcagttcggttttgaaccaaaccaaacaaggtcggat 11846308  T
Q  147 acgttttcg 155  Q
    || ||||||    
T  11846307 acattttcg 11846299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 23301572 - 23301441
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttt 152  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||||| || ||||||||||| ||   |||    
T  23301572 ttggatctcaaaattaaaaactgagaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttt 23301473  T
Q  153 tcggtttggtttaatttggattttcgatttca 184  Q
    ||||||||||| | |||| ||||||| |||||    
T  23301472 tcggtttggttcagtttgaattttcggtttca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 9826906 - 9826742
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccga--caaaacaaggtcg 143  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| ||||| ||||||  ||||  |||||||    
T  9826906 tcggttctttggatttcaaaattaaaaaccgagaatcgaaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcg 9826807  T
Q  144 gatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacac 209  Q
    ||||| |||||||||||||| | |||| ||||| | |||| | | |||| |||| |||||| ||||    
T  9826806 gatac-ttttcggtttggttcagtttgaatttttggtttcttcggttttctccgaaccactaacac 9826742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 2454128 - 2454289
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggat 146  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||| ||||  |||||||||| ||  || || |||||||    
T  2454128 ggttctttggatctcaaaattaaaaaccaagaatcgaaccaaactatatcagtttaggttggttcggttcgattttgaaccgaacctaataaagtcggat 2454227  T
Q  147 acgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttaca 208  Q
    || || |||||||| ||  ||||| |||||| ||||||| | ||||||||| ||||||||||    
T  2454228 actttctcggtttgattccatttgaattttcaatttcatcggttttgtccgaaccacttaca 2454289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 26186698 - 26186863
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcgg 144  Q
    |||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||  |||| ||| |||||  |  | ||||| ||      
T  26186698 tcggttctttggattttaaaattaaaaaccgagaaccaaaccaaactagatcggtttaagttggttcaattcaatttagaaccaaatcagacaagatcaa 26186797  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||| ||||  |||||||| |||||  ||||||||||| || | ||||||||| ||||||||||||    
T  26186798 atacttttttagtttggttcaatttaaattttcgattttatcggttttgtccgaaccacttacacc 26186863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 23586015 - 23585913
Alignment:
Q  54 tttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggtt-ggttcgttcagttttgaaccg-acaaaacaaggtcggatacgtt 151  Q
    |||| ||||||||||||||| ||||||||| |||||||||| ||||||||| ||| | || |||| ||||||||||| ||||||||||||||||||| ||    
T  23586015 tttgaatctcaaaattaaaatccgagaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatacttt 23585916  T
Q  152 ttc 154  Q
    |||    
T  23585915 ttc 23585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 5076298 - 5076238
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||| |||||    
T  5076298 tcggttctttggatttcaaaataaaaaaccgagaacggaaccaaactagaccggtataggt 5076238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 11971571 - 11971526
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcgg 100  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||    
T  11971571 ttggatctctaaattaaaaaccgagaaccgaaccaaacaagatcgg 11971526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 32613900 - 32613977
Alignment:
Q  84 gaaccaaactagatcggtttaggttggttc-gttcagttttgaaccga-caaaacaaggtcggatacgttttcggttt 159  Q
    |||||||||||||||||||||||||||||| |||| |||||||||| | | |||||| ||| ||||| ||||||||||    
T  32613900 gaaccaaactagatcggtttaggttggttcggttcggttttgaaccaagccaaacaaagtcagatactttttcggttt 32613977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 48070783 - 48070608
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcgg 144  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||  |  ||||||||||||    
T  48070783 tcggttctttggatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcgg 48070684  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaatcatg 220  Q
    |||  |||| ||||| |||   ||| |||||||| ||| || ||||||||||| |||||||||||| |||| ||||    
T  48070683 atatttttttggtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacacccctaagcatg 48070608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 27226892 - 27227094
Alignment:
Q  19 taaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttc 117  Q
    |||||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||| ||||||||||||||| || ||||||||| ||||||| ||||    
T  27226892 taaaatggagagtgagattaccatcggttcggttccttagatcttaaaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttc 27226991  T
Q  118 agttttgaacc-gacaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaat 216  Q
     | ||||| ||  || | ||||| | |||||| ||||  ||||| ||   |||||| ||| |||||||| | ||||||||| || ||||||||| |||||    
T  27226992 ggctttgatccaaaccagacaagatgggataccttttaagtttgtttcggtttggacttttgatttcatcggttttgtccgaacaacttacacccctaat 27227091  T
Q  217 cat 219  Q
    |||    
T  27227092 cat 27227094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 25545185 - 25545389
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcg--------gttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    ||||||||||||||||||| ||||||| ||||||        ||||||||||| | ||||||||||   ||||||| |||||||||||||||||||||||    
T  25545185 tactaaaatggggagtgaggttagcattggttcgattcattggttctttggattttaaaattaaaagttgagaaccaaaccaaactagatcggtttaggt 25545284  T
Q  108 tgg-ttcgttcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccactt 205  Q
    ||| || |||| ||||||||||| || || |||||||| |||| ||||  |||| | |   |||| ||||||||||| || ||||||||| | |||||||    
T  25545285 tggtttagttcggttttgaaccgaaccaatcaaggtcgaatacttttttagttttgctcggtttgaattttcgattttatcgattttgtctgaaccactt 25545384  T
Q  206 acacc 210  Q
    |||||    
T  25545385 acacc 25545389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 216
Target Start/End: Original strand, 3996962 - 3997130
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccga-caaaacaaggtcggat 146  Q
    ||||| |||||||||||||| |||| |||||||||||||||||| || | ||||||| |||||| | ||| |||||||||| | | |||||| |||||||    
T  3996962 ggttccttggatctcaaaatgaaaa-ccgagaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggat 3997060  T
Q  147 acgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaat 216  Q
     | | |||||||||||    |||||| ||||| |||||||| ||||||||| |||||||||||| |||||    
T  3997061 tcttcttcggtttggtacggtttggactttcggtttcattggttttgtccgaaccacttacacccctaat 3997130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 12471755 - 12471914
Alignment:
Q  51 ttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccgacaaaacaaggtcggatacg 149  Q
    ||||||| |||||||||||||||||  |||||||||| ||||||||||| |||| |||||||| |||| ||||||||| ||   || ||| |  ||||||    
T  12471755 ttctttgaatctcaaaattaaaaactaagaaccgaactaaactagatcgatttaagttggttcggttcggttttgaacagaaccaataagatgagatacg 12471854  T
Q  150 ttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacac 209  Q
    ||||| |||| |||   ||||||||||| ||||||| | |||| |||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccacttacac 12471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 31136309 - 31136195
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgttcagttttgaaccg-acaaaacaaggtcgga 145  Q
    ||||||||||||||||| |||||  ||||| |||||| ||||||| || || ||||||||||||||||    ||||||||||| |  |||||||||||||    
T  31136309 tcggttctttggatctcgaaatttgaaaccaagaaccaaaccaaattatattggtttaggttggttcg----gttttgaaccgaatcaaacaaggtcgga 31136214  T
Q  146 tacgttttcggtttggttt 164  Q
    ||| |||||||||||||||    
T  31136213 tactttttcggtttggttt 31136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 12470987 - 12471091
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggtt--------cggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    ||||||||||||||||||||||| ||||| ||        ||||| |||||||||||||||||||||| ||||||||||| |||||||| || |||||||    
T  12470987 tactaaaatggggagtgagattaacatcgattaagttcatcggttttttggatctcaaaattaaaaactgagaaccgaactaaactagaccgatttaggt 12471086  T
Q  108 tggtt 112  Q
    |||||    
T  12471087 tggtt 12471091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 22331994 - 22332059
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||    
T  22331994 tcggttctttggatctcaaaattaaaaaccgaaaatcgaacaaaactagatcgatttaggtcggtt 22332059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 12470240 - 12470303
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttgg 110  Q
    |||||||||||||||||||||||| ||||  ||||| |||||||||||||| ||||||||||||    
T  12470240 tcggttctttggatctcaaaattagaaactaagaacggaaccaaactagattggtttaggttgg 12470303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 44523693 - 44523755
Alignment:
Q  51 ttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    |||||||| ||||||||||||||| |||||||||||||||| || || ||||||||||||||||    
T  44523693 ttctttgg-tctcaaaattaaaaatcgagaaccgaaccaaattatattggtttaggttggttcg 44523755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 46265328 - 46265438
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttt 152  Q
    |||||||||||||| | |||| || |||| |||||||| |||||||||||| ||| ||| |||| ||||||||||| ||   |||||||||||||| |||    
T  46265328 ttggatctcaaaatgacaaactgaaaaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacattt 46265427  T
Q  153 tcggtttggtt 163  Q
    | |||||||||    
T  46265428 ttggtttggtt 46265438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 1194595 - 1194546
Alignment:
Q  58 gatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  1194595 gatctcaaaataaaacaccgagaaccgaaccaaattagatcggtttaggt 1194546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 2923114 - 2923004
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttt 152  Q
    |||||||||||||| ||||| | ||||||||| ||||| || ||||| ||| ||||||| |||| ||||||||||| || | ||||||| | |||| |||    
T  2923114 ttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggttgaatacattt 2923015  T
Q  153 tcggtttggtt 163  Q
    | |||||||||    
T  2923014 ttggtttggtt 2923004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 35738150 - 35738195
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaac 92  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||    
T  35738150 tcggttccttggatctcaaaatgaaaaactgagaaccgaaccaaac 35738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 21378581 - 21378628
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactag 95  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||||||    
T  21378581 tcggttctttgaatctcaaaat-aaaaactgagaaccgaaccaaactag 21378628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 2197695 - 2197753
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc 113  Q
    |||||||||||||| |||||||||||||| || ||||| || ||| ||||| |||||||    
T  2197695 ttggatctcaaaatgaaaaaccgagaacccaatcaaacaaggtcgatttagattggttc 2197753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 7995102 - 7995058
Alignment:
Q  59 atctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    |||||||||| |||||||  ||||| |||||||||||||||||||    
T  7995102 atctcaaaatgaaaaaccatgaaccaaaccaaactagatcggttt 7995058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 12013040 - 12013088
Alignment:
Q  137 aaggtcggatacgttttcggtttggtttaatttggattttcgatttcat 185  Q
    |||||||||||| ||||||||| |||| |||||  ||||||||||||||    
T  12013040 aaggtcggatactttttcggttcggttcaatttaaattttcgatttcat 12013088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 19602331 - 19602390
Alignment:
Q  50 gttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatc-ggtttaggttg 109  Q
    ||||||||||||||||||| |||||||| ||| | || ||||||||||| |||||||||||    
T  19602331 gttctttggatctcaaaataaaaaaccgtgaatc-aaacaaactagatcgggtttaggttg 19602390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 3767634 - 3767789
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    ||||||||||||||||||| |||||||||||||||||| |        ||||||||||||| |||||||||||||| ||||||||||||||||||||| |    
T  3767634 tactaaaatggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagat 3767733  T
Q  108 tggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttgg 161  Q
    |||||| |||| ||||||||||| || |||||||||||||||| ||||||||||||    
T  3767734 tggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcggtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 16570836 - 16571048
Alignment:
Q  12 ataatactaaaatggggagtgagattagcatcggttc--------ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    ||||||||||||||||||||||  |||||||||||||        |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  16570836 ataatactaaaatggggagtgaagttagcatcggttcagttcatcggttctttggatctcaaaattaaaaatcgagaacctaaccaaattagatcggttt 16570935  T
Q  104 aggttgg-ttcgttcagttttgaacc-gacaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggacc 201  Q
    ||||||| || |||| ||||||||||  || ||||||||| |||||  |||| |||||||||   |||| ||||| |||||||| | ||||||||  |||    
T  16570936 aggttggtttggttcggttttgaaccaaaccaaacaaggttggata-ttttttggtttggttcggtttgaatttttgatttcatcggttttgtccaaacc 16571034  T
Q  202 acttacacctctaa 215  Q
    | ||||||| ||||    
T  16571035 aattacacccctaa 16571048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 9505224 - 9505013
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    ||||||||||||||||||| || ||||||||||||||  |        ||||| |||||||||||| || ||||||||||||||||| |||||||| |||    
T  9505224 tactaaaatggggagtgaggttggcatcggttcggtttatcggtttgttggatttcaaaattaaaatcctagaaccgaaccaaactatatcggttttggt 9505125  T
Q  108 tggttc-gttcagttttgaaccg-acaaaacaaggtcggata-cgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccact 204  Q
    |||||| ||||  ||||||| || || ||||||||| |||||   |||||| |||||||   |||||||||||| |||||| | |||| |||  ||||||    
T  9505124 tggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattttcggtttcatcggttttatccaaaccact 9505025  T
Q  205 tacacctctaat 216  Q
    |||||| |||||    
T  9505024 tacacccctaat 9505013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 32321968 - 32321803
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgttcagttttgaa-ccga-caaaacaaggtcgg 144  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||| |||| |||| |  ||||| || |||| | |||||||||||     
T  32321968 tcggttcattgaatcttaaaattaaaaaccgagaaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcga 32321869  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||| ||||||||||| |||  ||| | |||||| ||||||   |||| |||| ||||||| ||||    
T  32321868 atactttttcggtttgatttggtttaggttttcggtttcatcagttttatccgaaccacttgcacc 32321803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 9040570 - 9040470
Alignment:
Q  58 gatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgttcagttttgaaccga-caaaacaaggtcggatacgttttcgg 156  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||    |||||||||| | |||  ||||||||||||| |||||||    
T  9040570 gatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcg----gttttgaacctatcaaggcaaggtcggatacattttcgg 9040475  T
Q  157 tttgg 161  Q
    |||||    
T  9040474 tttgg 9040470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 34760833 - 34760940
Alignment:
Q  57 ggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggatac-gtttt 153  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||  |||||||||| || ||||||| || |||||  ||||    
T  34760833 ggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatactttttt 34760932  T
Q  154 cggtttgg 161  Q
    ||||||||    
T  34760933 cggtttgg 34760940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 25456106 - 25456265
Alignment:
Q  12 ataatactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    |||||| |||||||||||||||| |||||||| ||||| ||| |        ||||||||||||| ||||||||| |||| |||||||| |||| |||||    
T  25456106 ataatagtaaaatggggagtgaggttagcatcagttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaacaagattggttt 25456205  T
Q  104 aggttggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttgg 161  Q
    || ||| ||| |||| ||||||||| | || | |||||||||||||| ||| ||||||||    
T  25456206 agattgattcggttcggttttgaactgaaccagacaaggtcggatacatttccggtttgg 25456265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 25808259 - 25808368
Alignment:
Q  12 ataatactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    |||||| ||||||| |||||||| |||||||||||||| ||| |        ||||||||||||| |||||||||||| | |||||||  ||||||||||    
T  25808259 ataatattaaaatgaggagtgaggttagcatcggttcgattcatcgatttcttggatctcaaaatgaaaaaccgagaatcaaaccaaaaaagatcggttt 25808358  T
Q  104 aggttggttc 113  Q
    || |||||||    
T  25808359 agattggttc 25808368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 7956369 - 7956424
Alignment:
Q  59 atctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    |||||||||| |||||||  ||||| ||||||||||||||||||| | ||||||||    
T  7956369 atctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcg 7956424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 14684387 - 14684453
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc 113  Q
    ||||||| || ||| ||||||| |||||||||||||||||||||||  | ||||| ||| |||||||    
T  14684387 tcggttccttagatatcaaaatgaaaaaccgagaaccgaaccaaacatggtcggtatagattggttc 14684453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3555435 - 3555500
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    ||||||||||| || |||||||||||||   |||||| ||||||||||||| | |||| |||||||    
T  3555435 tcggttctttgaatttcaaaattaaaaattaagaaccaaaccaaactagattgatttaagttggtt 3555500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 25344219 - 25344300
Alignment:
Q  135 acaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaat 216  Q
    |||||||||||||| |||| |||||| || |||||| | |||| |||| |||| |||| |||| ||| |||||||| |||||    
T  25344219 acaaggtcggatacatttttggtttgattcaatttgaactttcaattttattggttttatccgaaccgcttacaccgctaat 25344300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 8414595 - 8414758
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcgg 144  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| |||||| ||   ||| |||||||||||||||  || ||||||||||||    
T  8414595 tcggttctttggatctcaaaattaaaaaccgagaatagaaccaaactagattggtttatgtgtcttcggttcagttttgaaccaaaccaaacaaggtcgg 8414694  T
Q  145 atacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttaca 208  Q
    |||| |||||||||| ||| | |||||||||||  |||||| | ||||||||| ||||||||||    
T  8414695 atactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccacttaca 8414758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 513114 - 512951
Alignment:
Q  55 ttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg-ttcagttttgaaccga-caaaacaaggtcggatacgttt 152  Q
    ||||||||||||||||||||   |||| |||| ||||||||||||||||||||||||||| ||  |||||||||||| | ||||||| | |||||| |||    
T  513114 ttggatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttt 513015  T
Q  153 tcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaat 216  Q
    |||||||||||  |||||| |||| ||||||||   ||||||||| ||||||||||||||||||    
T  513014 tcggtttggttcgatttgggtttttgatttcatcagttttgtccgaaccacttacacctctaat 512951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 11911754 - 11911646
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcgg 144  Q
    ||||||| | |||| ||||||||||||||| |||||  || |||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||||    
T  11911754 tcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgg 11911655  T
Q  145 atacgtttt 153  Q
    |||| ||||    
T  11911654 atacttttt 11911646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 27320483 - 27320646
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccg-acaaaacaaggtcggat 146  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||||||  || | |||||||| |||   |||||||||| || ||||||||||||||    
T  27320483 ggttcattggatctcataattaaaaaccgaaaaccgaaccaaactagatcttttaatgttggttcggtttgattttgaaccgaaccaaacaaggtcggat 27320582  T
Q  147 acgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    || |||| | |||| || | ||| |||||||| |||||| | ||| ||||  ||||||||||||    
T  27320583 acttttttgatttgattcagtttagattttcggtttcatcggtttcgtccaaaccacttacacc 27320646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 8084138 - 8083987
Alignment:
Q  65 aaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccga-caaaacaaggtcggatacgtttt-cggtttgg 161  Q
    |||| |||||||  ||||| ||||||||||||||||||| | ||||||||  |  ||||  |||| | | |||||||||||||||  |||| |||||||     
T  8084138 aaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaaccaaaccaaacaaggtcggatatttttttcggtttga 8084039  T
Q  162 tttaatttggattttcgatttcattgattttgtccggaccacttacacctct 213  Q
    |||| |||||| |||||||||| ||| || |||||| |||||||||||||||    
T  8084038 tttagtttggactttcgatttcgttggttatgtccgaaccacttacacctct 8083987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 16584891 - 16585046
Alignment:
Q  57 ggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccga-caaaacaaggtcggatacgttttc 154  Q
    ||||||| |||| |||||||  ||||| ||||||||||||||||| | | ||||||||  || ||||  |||||| | ||||||||| |||||  |||||    
T  16584891 ggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatattttttc 16584990  T
Q  155 ggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    | |||||||   |||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  16584991 gttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacacc 16585046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 32678434 - 32678518
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcg--------gttctttggatctcaaaattaaaaaccgagaaccgaaccaaac 92  Q
    ||||||||||||||||||| |||||||| |||||        |||| ||||||||||||||||||||||||||||||| ||||||    
T  32678434 tactaaaatggggagtgaggttagcatcagttcgattcatcggttcattggatctcaaaattaaaaaccgagaaccgagccaaac 32678518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 32678525 - 32678606
Alignment:
Q  133 aaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctcta 214  Q
    |||||||||||||||  ||||||| || |||   |||| |||||||||||||| | |||||| || ||||||||||||||||    
T  32678525 aaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctcta 32678606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 44581820 - 44581885
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    |||||| ||||||||||||||| ||||| | ||||||||| ||||||||||  |||||||| ||||    
T  44581820 tcggttatttggatctcaaaataaaaaatcaagaaccgaatcaaactagattagtttaggtcggtt 44581885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 11620076 - 11620031
Alignment:
Q  58 gatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    ||||||||||| |||||||  ||||| |||||||||||||||||||    
T  11620076 gatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggttt 11620031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 17530771 - 17530706
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg 114  Q
    |||||||||||| ||||||  |||| | ||||||||||||||| || ||||||||  |||||||||    
T  17530771 ggttctttggatatcaaaaaaaaaatcggagaaccgaaccaaattatatcggttttagttggttcg 17530706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 25785910 - 25785805
Alignment:
Q  57 ggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccga-caaaacaaggtcggatacgttttc 154  Q
    ||||||| |||| |||||||  ||||| |||||||||| |||||||| | ||||||||  || ||||  |||||| | |||||||||||||||  |||||    
T  25785910 ggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaaccgaaccaaacaaggtcggatattttttc 25785811  T
Q  155 ggtttg 160  Q
    ||||||    
T  25785810 ggtttg 25785805  T

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Target: scaffold0564 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 6511 - 6310
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttcg- 114  Q
    ||||| ||||||||||||| ||||||||| ||    || ||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||     
T  6511 tactagaatggggagtgaggttagcatcgatt----tcattgtatctcaaaattaaaaaccgagaaccagatcaaactagatcggtttaggttggttcga 6416  T
Q  115 ttcagttttgaaccga--caa---aacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacac 209  Q
    |||| |||| ||||||  |||   | | ||||||||||| |||||||||| ||| | ||||||||||| |||| || | ||||||||| | |||||| ||    
T  6415 ttcaattttaaaccgaaccaaactagctaggtcggatactttttcggtttagttcagtttggattttcaattttatcggttttgtccgaatcacttatac 6316  T
Q  210 ctctaa 215  Q
    | ||||    
T  6315 ccctaa 6310  T

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Target: scaffold0002 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 344328 - 344423
Alignment:
Q  17 actaaaatggggagtgagattagcatcggttcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt 112  Q
    |||||||||| ||||||| ||||||| |||||||||||||| |  ||||||||||||| ||||||||||||| || |||| |||||||||||||||    
T  344328 actaaaatggagagtgaggttagcattggttcggttctttgaaagtcaaaattaaaaatcgagaaccgaaccgaagtagaccggtttaggttggtt 344423  T

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Target: scaffold0590 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 8336 - 8220
Alignment:
Q  47 tcggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggtt-cgttcagttttgaaccgaca-aaacaaggtcgg 144  Q
    |||| ||||||||||| |||||  |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||| | |||||||||| |    
T  8336 tcggctctttggatctaaaaatacaaaatcgagaaccgaaccaaactagatcgatttaggttggttccattcagttttgaaccgaaacaaacaaggtcag 8237  T
Q  145 atacgttttcggtttgg 161  Q
    |||| | |||| |||||    
T  8236 atacttcttcgatttgg 8220  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 31896033 - 31895894
Alignment:
Q  79 gaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaaccga-caaaacaaggtcggatacgttttcggtttggtttaatttggatttt 176  Q
    ||||| ||||||||||||||||||| | ||||||| | || ||||  |||||| | |||||||||||||||  |||||||||||||| | |||||| |||    
T  31896033 gaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggtcggatattttttcggtttggttcagtttggacttt 31895934  T
Q  177 cgatttcattgattttgtccggaccacttacacctctaat 216  Q
    ||||||  ||| ||||||||| |||||||||||| |||||    
T  31895933 cgattttgttggttttgtccgaaccacttacacccctaat 31895894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 1498172 - 1498363
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    |||||||||||||||| |  |||||||||||||||||| |        ||||||||||||| ||| || ||||||| |||  ||||| ||||||||||||    
T  1498172 tactaaaatggggagtcatgttagcatcggttcggttcatcggtttattggatctcaaaataaaatactgagaaccaaacttaactacatcggtttaggt 1498271  T
Q  108 tggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccg 197  Q
    |||||| |||| ||||||||||| || |||||||||||||||  || || ||||| ||   |||||||||||| |||||| | |||||||||    
T  1498272 tggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggattttcggtttcatcggttttgtccg 1498363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 17770377 - 17770216
Alignment:
Q  51 ttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttggttc-gttcagttttgaacc-gacaaaacaaggtcggatac 148  Q
    |||||||||||||||| ||||||||| |||||  || | |||||| ||||||||||||||||| |||||| ||||||||  || ||| ||| | ||||||    
T  17770377 ttctttggatctcaaatttaaaaaccaagaactaaatccaactagttcggtttaggttggttcggttcagctttgaaccaaaccaaaaaagattggatac 17770278  T
Q  149 gttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
     ||| |||||| ||||  |||||||||| | ||||||   ||||||| | ||| ||||||||    
T  17770277 ttttgcggtttagtttggtttggatttttggtttcatcagttttgtctgaaccgcttacacc 17770216  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 208
Target Start/End: Complemental strand, 29126250 - 29126089
Alignment:
Q  49 ggttctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggttgg-ttcgttcagttttgaaccga-caaaacaaggtcggat 146  Q
    |||| ||||||| ||||||| |||||  ||||||| ||| |||||||| ||||||||||||| || |||| ||||  ||| || | ||||||  ||||||    
T  29126250 ggttttttggatatcaaaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggat 29126151  T
Q  147 acgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttaca 208  Q
    || ||||||||||||||   |||  ||| || ||||| ||| ||||||||| ||||||||||    
T  29126150 actttttcggtttggttcggtttaaattctccatttcgttggttttgtccgaaccacttaca 29126089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 19947789 - 19947712
Alignment:
Q  133 aaacaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacc 210  Q
    |||||| ||||||||  ||||||||||||||   |||||| |||||  ||| ||||||||||||| ||||||||||||    
T  19947789 aaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacacc 19947712  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 7239257 - 7239378
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggtt--------ctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    |||||||||||| |||||| |||||||||||||| ||        ||| |||||| ||||| ||||||  |||||||||||||||||  ||| |||| ||    
T  7239257 tactaaaatgggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagt 7239356  T
Q  108 tggttc-gttcagttttgaacc 128  Q
    |||||| |||| ||||||||||    
T  7239357 tggttcggttcggttttgaacc 7239378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 7244433 - 7244554
Alignment:
Q  16 tactaaaatggggagtgagattagcatcggttcggtt--------ctttggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggtttaggt 107  Q
    |||||||||||| |||||| |||||||||||||| ||        ||| |||||| ||||| ||||||  |||||||||||||||||  ||| |||| ||    
T  7244433 tactaaaatgggaagtgaggttagcatcggttcgatttatcggatcttgggatcttaaaataaaaaactaagaaccgaaccaaactaactcgatttaagt 7244532  T
Q  108 tggttc-gttcagttttgaacc 128  Q
    |||||| |||| ||||||||||    
T  7244533 tggttcggttcggttttgaacc 7244554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 33808 - 33727
Alignment:
Q  135 acaaggtcggatacgttttcggtttggtttaatttggattttcgatttcattgattttgtccggaccacttacacctctaat 216  Q
    |||||||| ||||| |||||||||||||| |||||||| ||||  |||||||| |||| |||| |||||||||||| |||||    
T  33808 acaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacacccctaat 33727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 13958 - 13799
Alignment:
Q  12 ataatactaaaatggggagtgagattagcatcggttcggttctt--------tggatctcaaaattaaaaaccgagaaccgaaccaaactagatcggttt 103  Q
    |||||| |||||||||||||||| |||||||||||||| ||| |        ||||||||||||| ||||||||| |||| |||||||  ||||| ||||    
T  13958 ataatagtaaaatggggagtgaggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcagttt 13859  T
Q  104 aggttggttc-gttcagttttgaaccg-acaaaacaaggtcggatacgttttcggtttgg 161  Q
    || ||||||| ||||  |||||||| | || | ||||||||| |||| ||| ||||||||    
T  13858 agattggttcggttcgattttgaactgaaccagacaaggtcgaatacatttccggtttgg 13799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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