View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14967_high_12 (Length: 292)

Name: NF14967_high_12
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14967_high_12
NF14967_high_12
[»] chr3 (3 HSPs)
chr3 (5-269)||(36377931-36378191)
chr3 (5-45)||(36370639-36370679)
chr3 (5-45)||(36386026-36386066)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 36378191 - 36377931
Alignment:
Q  5 tagataattctcgttgcaaatggcattgaagactttgcttcatcaaagaagcatttgaggaggagatatgactacggatatgatgaaagagctcaccaat 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  36378191 tagataattttcgttgcaaatggcattgaagactttgcttcatcaaagaagcatttgaggaggagatatgactacggat-----gaaagagctcaccaat 36378097  T
Q  105 atgagtttaaattttgatccctaatgtttatttatattcatttgttttatgtgaccttggactatccagaagaaaaaccattcaatctccggaaattttt 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36378096 atgagtttaaattttgatccctaaagtttatttatattcatttgttttctgtgaccttggactatccagaagaaaaaccattcaatctccggaaattttt 36377997  T
Q  205 c-nnnnnnnnttaaattactctttatattttcggttcgccattgttggattcaattgcatatgaat 269  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377996 caaaaaaaagttaaattactctttatattttcggttcgccattgttggattcaattgcatatgaat 36377931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36370679 - 36370639
Alignment:
Q  5 tagataattctcgttgcaaatggcattgaagactttgcttc 45  Q
    ||||||||| || |||||||||||||| |||||||||||||    
T  36370679 tagataattttcattgcaaatggcattaaagactttgcttc 36370639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36386066 - 36386026
Alignment:
Q  5 tagataattctcgttgcaaatggcattgaagactttgcttc 45  Q
    ||||||||| || |||||||||||||||||| |||||||||    
T  36386066 tagataattttcattgcaaatggcattgaaggctttgcttc 36386026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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