View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_high_14 (Length: 269)
Name: NF14967_high_14
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 8034486 - 8034746
Alignment:
| Q |
1 |
ttactgtaaggaatggttggaagacttattcataaataaattattaggattatgtgattggaagatggataaaaacttccaaggtcgttcttaattagaa |
100 |
Q |
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| T |
8034486 |
ttactgtaaggaatggttggaagacttattcataaataaattattaggattatgtgattggaagatggataaaaacttccaaggtcgttcttaattagaa |
8034585 |
T |
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| Q |
101 |
tactatttcccagtgagcatcaactgcacgatgatgttatcttagactccacatctgtatcatttgatctctacttcttagaggttttccgtgcagcaat |
200 |
Q |
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| T |
8034586 |
tactatttcccagggagcatcaactgcacgatgatgttatcttagacttcacatctgtatcatttgatctctacttcttagaggttttccgtgcagcaat |
8034685 |
T |
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| Q |
201 |
agttcaactgctgaattttgctgattcgtttgctaattgaagtcattcagcctggcctatg |
261 |
Q |
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| T |
8034686 |
agttcaactgctgaattttgctgattcgtttgctaattgaagtcattcagcctggcctatg |
8034746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 255
Target Start/End: Original strand, 8039914 - 8040107
Alignment:
| Q |
58 |
ttggaagatggataaaaacttccaaggtcgttcttaattagaatactatttcccagtgagcatcaactgcacgatgatgttatcttagactccacatctg |
157 |
Q |
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| T |
8039914 |
ttggaagatggataaaaacttccaaggtcgctctta----gaatactatttcccggtgagcgtcaactgtacgatgaggttatcttagactccgtatctg |
8040009 |
T |
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| Q |
158 |
tatcatttgatctctacttcttagaggttttccgtgcagcaatagttcaactgctgaattttgctgattcgtttgctaattgaagtcattcagcctgg |
255 |
Q |
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| T |
8040010 |
tatcatttgatctctacttcttagatgttttccatgcaacaataattcaactgctgatttttgctgattcgtttgcaaattgaagccattcagcctgg |
8040107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 31402265 - 31402457
Alignment:
| Q |
46 |
aggattatgtgattggaagatggataaaaacttccaaggtcgttcttaattagaatactatttcccagtgagcatcaactgcacgatgatgttatcttag |
145 |
Q |
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| T |
31402265 |
aggattacatgattggaagatggataaaaacttccaaggttgctc----ttagaatactatttcccagtgaacgtcaactatatgatggtgtcttctcag |
31402360 |
T |
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| Q |
146 |
actccacatctgtatcatttgatctctacttcttagaggttttccgtgcagcaatagttcaactgctgaattttgctgattcgtttgctaattgaag |
242 |
Q |
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| T |
31402361 |
aattcaactctgaatcatctgatcactatttctcagatgtttgtcatggagcgataattcaacttctgaattttgctgattcgtttgcaaatcgaag |
31402457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31402197 - 31402241
Alignment:
| Q |
1 |
ttactgtaaggaatggttggaagacttattcataaataaattatt |
45 |
Q |
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| T |
31402197 |
ttaccgtaaggaatggttggaagacttgttaataaataaattatt |
31402241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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