View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_high_16 (Length: 248)
Name: NF14967_high_16
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30223258 - 30223027
Alignment:
| Q |
1 |
tgttgtttaattgaagttgtccattattgtattcatttaatattttttggtattcggtgtataacatatctatggccattctttgggtgcagcatattgc |
100 |
Q |
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| T |
30223258 |
tgttgtttaattgaagttgtccattattgtattcatttaatattttttggtattcagtgtataacatatctatggccattctttgggtgcagcatattgc |
30223159 |
T |
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| Q |
101 |
aaacatcgccagtaacatggcagccaatgttcatgatgttgttgaaggttagaattttgttaatttcttctagtaaagaacattgtaccagaaccatatt |
200 |
Q |
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| T |
30223158 |
aaacatcgccagtaacatggcagccaatgttcatgatgttgttgaaggtttgaattttgttaatttcttctagtaaagaacattgtaccataaccatatt |
30223059 |
T |
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| Q |
201 |
ggaaaagaacattgtatcagaaccattttatt |
232 |
Q |
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| T |
30223058 |
ggaaaagaacattgtatcagaaccattttatt |
30223027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 9634378 - 9634310
Alignment:
| Q |
164 |
tttcttctagtaaagaacattgtaccagaaccatattggaaaagaacattgtatcagaaccattttatt |
232 |
Q |
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| T |
9634378 |
tttcttatagtcaataacattgtatcagaaccatattggataagaacattgtatcagaaccattttatt |
9634310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 41941963 - 41941998
Alignment:
| Q |
71 |
tatggccattctttgggtgcagcatattgcaaacat |
106 |
Q |
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| T |
41941963 |
tatggccattctgtgggtgcagcatattgcaaacat |
41941998 |
T |
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