View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_high_19 (Length: 238)
Name: NF14967_high_19
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 43415088 - 43415171
Alignment:
| Q |
134 |
aagttaaaaagttgtctcaatgtttcattgtttatttaagttagtagaactttgactttttacttaacaccaattttgtttgaca |
218 |
Q |
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| T |
43415088 |
aagttaaaaagttgtctcaatgtttcattgtttatttaagttagtagaactttgactttttactt-acaccaattttgtttgaca |
43415171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 43414989 - 43415098
Alignment:
| Q |
5 |
tacaaatgaaaaatggagaataatttatgcaatttgagaaggaatgtttgggaagttatgtcatagaacctcttattatttgtttaagtcattattttga |
104 |
Q |
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| T |
43414989 |
tacatatgaaaaattgagatgaatttatgcaatttgagaaggcaggtttgagttgttatgccatagaacctcttattatttgtttaagtcatgattttga |
43415088 |
T |
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| Q |
105 |
agttaaaaag |
114 |
Q |
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| T |
43415089 |
agttaaaaag |
43415098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 5460635 - 5460552
Alignment:
| Q |
138 |
taaaaagttgtctcaatgtttcattgtttatttaagttagtagaactttgactttttacttaacaccaattttgtttgacacaat |
222 |
Q |
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| T |
5460635 |
taaaaagttgtctcaatgtttcattgtttatttaagttagtagaactttgactttttactt-ataccagttttgtttgacacaat |
5460552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 5460741 - 5460629
Alignment:
| Q |
5 |
tacaaatgaaaaatggagaataatttatgcaatttgagaaggaatgtttg---ggaagttatgtcatagaacctcttattatttgtttaagtcattattt |
101 |
Q |
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| T |
5460741 |
tacatatgaaaaatggagaagaatttatgcaatttgagaaggcatgtttgagttgttgttatgccatagaacctcttattatttgtataagtcatggttt |
5460642 |
T |
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| Q |
102 |
tgaagttaaaaag |
114 |
Q |
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| T |
5460641 |
tgaaaataaaaag |
5460629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 29379200 - 29379284
Alignment:
| Q |
138 |
taaaaagttgtctcaatgtttcattgtttatttaagttagtagaactttgac-tttttacttaacaccaattttgtttgacacaat |
222 |
Q |
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| T |
29379200 |
taaaaagttgtctcaatgtttcattgtttatttaagttagtagaactttgacttttttactt-ataccaattttgtttgacacaat |
29379284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 29379094 - 29379206
Alignment:
| Q |
5 |
tacaaatgaaaaatggagaataatttatgcaatttgagaaggaatgtttg---ggaagttatgtcatagaacctcttattatttgtttaagtcattattt |
101 |
Q |
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| T |
29379094 |
tacatatgaaaaatggagaagaatttatgcaatttgagaaggcatgtttgagttgttgttatgccatagaacctcttattatttgtataagtcatggttt |
29379193 |
T |
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| Q |
102 |
tgaagttaaaaag |
114 |
Q |
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| T |
29379194 |
tgaaaataaaaag |
29379206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 38944149 - 38944043
Alignment:
| Q |
1 |
tagctacaaatgaaaaatggagaataatttatgcaatttgagaaggaatgtttgggaagttatgtcatagaacctcttattatttgtttaagtcattatt |
100 |
Q |
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| T |
38944149 |
tagccacatatgaaaaatggagaataatttatgcaattcgagaaggcaggtttgagttattatgccatagaacctcttattatttgtttaagtcattgtt |
38944050 |
T |
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| Q |
101 |
ttgaagt |
107 |
Q |
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||||||| |
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| T |
38944049 |
ttgaagt |
38944043 |
T |
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