View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_high_3 (Length: 509)
Name: NF14967_high_3
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 16236533 - 16236060
Alignment:
| Q |
16 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctctttacactattgcggaatatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
16236533 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctctttacactgttgcggaatatc |
16236434 |
T |
|
| Q |
116 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgactccaggcaccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236433 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgactccaggctccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
16236334 |
T |
|
| Q |
216 |
aacgcaggccataactttactaaagccttccagaggcttgaatccgacggttttgctataaataactcagcaggaatatcacttcgctgatatttacccc |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16236333 |
aatgcaggccataactttactaaagccttccagaggcttgaatccgacggttttgctataaataactcagcaagaatatcacttcgctgatatttacccc |
16236234 |
T |
|
| Q |
316 |
tcataacctcagcccaaagagaagttgatccataatatatactccaacccattttcattatgcacgccttattcattacgttgagtctccttaagcctag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236233 |
tcataacctcagcccaaagagaagttgatccagaatatatactccaacccagtttcattatgcacgccttattcattacgttgagtctccttaagcctag |
16236134 |
T |
|
| Q |
416 |
accaccaaagacttttggttttgacaccgtttcccaactaacagcatggtatctcctgttgttctcgttgtcac |
489 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
16236133 |
accaccaaagacttttggttttgacactgtttcccaactaacagcatgatatctcttgttgttctcgttgtcac |
16236060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 32714819 - 32715284
Alignment:
| Q |
16 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctctttacactattgcggaatatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32714819 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccataaaaatcaaccagatctgcaaccttcatctctttacactgttgcggaatatc |
32714918 |
T |
|
| Q |
116 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgactccaggcaccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32714919 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgaatccaggctccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
32715018 |
T |
|
| Q |
216 |
aacgcaggccataactttactaaagccttccagaggcttgaatccgacggttttgctataaataactcagcaggaatatcacttcgctgatatttacccc |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32715019 |
aaagcaggccataactttactaaagccttccagaggcttgaatccgacggttttgctataaataactcagcaggaatatcacttcgctgatatttacccc |
32715118 |
T |
|
| Q |
316 |
tcataacctcagcccaaagagaagttgatccataatatatactccaacccattttcattatgcacgccttattcattacgttgagtctccttaagcctag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32715119 |
tcataacctcagcccaaagagaagttgatccagaatatatactccaacccagtttcattatgcacgccttattcattacgttgagtctccttaagcctag |
32715218 |
T |
|
| Q |
416 |
accaccaaagacttttggttttgacaccgtttcccaactaacagcatggtatctcctgttgttctc |
481 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |
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|
| T |
32715219 |
accaccaaagacttttggttttgacactgtttcccaactaacagcatgatatctcttgttgttctc |
32715284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Original strand, 28575911 - 28576384
Alignment:
| Q |
16 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctctttacactattgcggaatatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28575911 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctctttacactgttgcggaatatc |
28576010 |
T |
|
| Q |
116 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgactccaggcaccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28576011 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgaatccaggctccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
28576110 |
T |
|
| Q |
216 |
aacgcaggccataactttactaaagccttccagaggcttgaatccgacggttttgctataaataactcagcaggaatatcacttcgctgatatttacccc |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28576111 |
aatgcaggccataactttactaaagccttccagaggcttgaatccgacggttttgctataaataactcagcaggaatatcacttcgctgatatttacccc |
28576210 |
T |
|
| Q |
316 |
tcataacctcagcccaaagagaagttgatccataatatatactccaacccattttcattatgcacgccttattcattacgttgagtctccttaagcctag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28576211 |
tcataacctcagcccaaagagaagttgatccagaatatatactccaacccagtttcattatgcacgccttattcattacgttgagtctccttaagcctag |
28576310 |
T |
|
| Q |
416 |
accaccaaagacttttggttttgacaccgtttcccaactaacagcatggtatctcctgttgttctcgttgtcac |
489 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
28576311 |
accaccaaagacttttggttttgacactgtttcccaactaacaacatgatatctcttgttgttctcgttgtcac |
28576384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 18568021 - 18567799
Alignment:
| Q |
16 |
catcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctctttacactattgcggaatatc |
115 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||| ||| ||||| |||||||||| ||||||||||| || | |||||||| |||||||||||| |
|
|
| T |
18568021 |
catcataaggcaactattgattcaacatatccaaattccgatttccattgaaatcaaccaactctgcaaccttaatgtttttacactcttgcggaatatc |
18567922 |
T |
|
| Q |
116 |
aatttctaactcggacacacaaagcctctcctcaatccacatttgactccaggcaccaacacttttaccatcgcctatcgaccaaaaaatatttcgctct |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||| | || ||||||||||| |||| |||||||||| ||||||||||| |||| |
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|
| T |
18567921 |
aatttctaactcggacacacaacgcctcgcctcaatccacatttgactcaaagctccaacactttttccattacctatcgacccaaaaatatttctctct |
18567822 |
T |
|
| Q |
216 |
aacgcaggccataactttactaa |
238 |
Q |
| |
|
| || |||||||| ||||||||| |
|
|
| T |
18567821 |
atcgtaggccatagctttactaa |
18567799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 5698561 - 5698467
Alignment:
| Q |
297 |
cttcgctgatatttacccctcataacctcagcccaaagagaagttgatccataatatatactccaacccattttcattatgcacgccttattcat |
391 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||| |||||||| | || ||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
5698561 |
cttcgctgatatttacctctcataacctcagtacaaagagagtttgatccagagtaaatactccaacccaacttcatgatgcacgccttgttcat |
5698467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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