View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_high_4 (Length: 508)
Name: NF14967_high_4
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 244 - 490
Target Start/End: Complemental strand, 44122648 - 44122404
Alignment:
| Q |
244 |
tcactggtgttgttctcatgtttggattccattacatcgaagtgtaaattattactaagagagggatgaggagaagaaaaaatatagtccaattaaaata |
343 |
Q |
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| T |
44122648 |
tcactgatgttgttctcatatttggattccattacatcgaagtgtaaattaatactaagagagggatgaggagaa--aaaaatatagtccaattaaaata |
44122551 |
T |
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| Q |
344 |
ttcacggtgccccgagttttatagaaaatctgcacaactattgacttctttataaatatagtagatacttgcccgattcaattttgaaggttgagaaaat |
443 |
Q |
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| T |
44122550 |
ttcacggtgccccgagttttatagaaaatatgcacaactattgacttctttataaatatagtagatacttgcccgactcaattttgaaggttgagaaaat |
44122451 |
T |
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| Q |
444 |
gaaagatatcttctaggacaggtagaaatgcaacaatggatagggtg |
490 |
Q |
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| T |
44122450 |
gaaagatatcttctaggacaggtagaaatgaaacagtggatggggtg |
44122404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 44123836 - 44123621
Alignment:
| Q |
15 |
agcataggctaagtgtatatttggcaccattttgtaaaacgtggtttgatgaaaaccacgttggtgtaaaagttagtgtttggagtttttcgaaatcacg |
114 |
Q |
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| T |
44123836 |
agcataggctaagtgcatgtttggcaccattttgtaaaacgtggtttgatgaaaaccacgttggtgtaaaagttagtgtttggagtttttcgaaatcacg |
44123737 |
T |
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| Q |
115 |
acaaaaatgcactgtgaaatgtgcaaatacgtttttgtgtgttgcaaatgggaaattaaacacacactaagttggatagacatatcaagtttggtttaag |
214 |
Q |
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| T |
44123736 |
acaaaaatgcaccgtgaaatatgcatatatgtttttgtgtgttgcaaatgggaaactaaacacacactaagttggatagacatatcaagtttggtttaag |
44123637 |
T |
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| Q |
215 |
gctatacgtttgcatt |
230 |
Q |
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| T |
44123636 |
gctatatgtttgcatt |
44123621 |
T |
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