View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14967_low_1 (Length: 914)
Name: NF14967_low_1
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 18 - 691
Target Start/End: Complemental strand, 2893207 - 2892538
Alignment:
| Q |
18 |
gattccacccggttggcggggaccctgtgattattcgctcttagggtatccgtagttaaaattgacaagattatatattctatgatacacatttacaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2893207 |
gattccacccggttggcggggaccctgtgattattcgctcttagggtatccggagttaaaattgacaagattatatattctatgatacacatttacaatt |
2893108 |
T |
|
| Q |
118 |
ttcatatatcacttgaatacatattgattaattgtgttagtgaagactacaatgtagttagtcaggaattagactgttttgggttttagtaaggaattta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2893107 |
ttcatatatcacttgaatacatattgattaattgtgttagtgaagactacaatgtagttagtcaggaattagactgatttgggttttagtaaggaattta |
2893008 |
T |
|
| Q |
218 |
ctgagatgtaattttatcccaatagttttacattttatttcatatgaactgcaagtatcaaaagggaaagagaaggccatttagttgaagcttagttgtg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
2893007 |
ctgagatgtaattttatcccaatagttttacgttttatttcatatgaactgcaagtatcaaaagggaaggagaaggccatttacttgaagcttagttgtg |
2892908 |
T |
|
| Q |
318 |
tcttatgttttatctcatgaaatttcatgtttgttgactgatatgagttatcatgtagctccctatatatcataatcatattatgtccttaatgattaag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892907 |
tcttatgttttatctcatgaaatttcatgtt----gactgatatgagttatcatgtagctccctatatatcataatcatattatgtccttaatgattaag |
2892812 |
T |
|
| Q |
418 |
acatgtgttttgattatccattgtgaagaactatgttgtattctggttatgtaccttgtacttatatgtttaagacaagtatgaataattagagtcgaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892811 |
acatgtgttttgattatccattgtgaagaactatgttgtattctggttatgtaccttgtacttatatgtttaagacaagtatgaataattagagtcgaat |
2892712 |
T |
|
| Q |
518 |
ttgattgaacatgttaattccttgttttgttttattgaaagtatccagtatcacatcataacacctcatgtaatatatattccagaatttggtaaaagaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892711 |
ttgattgaacatgttaattccttgttttgttttattgaaagtatccagtatcacatcataacacctcatgtaatatatattccagaatttggtaaaagaa |
2892612 |
T |
|
| Q |
618 |
gattgatttggaaatgactggcggcggcgctaacaatcaatttgatgaacttacgtatggaaaaagtgagtgag |
691 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892611 |
gattgatttggaaatgactagcggcggcgctaacaatcaatttgatgaacttacgtatggaaaaagtgagtgag |
2892538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 782 - 893
Target Start/End: Complemental strand, 2892447 - 2892336
Alignment:
| Q |
782 |
ggacacacatcacccaatggtatttgattcaatacaagaagaaagctgcttctgctactgctgatgaatatgatggtaatactattctcaaatacaattc |
881 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892447 |
ggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctcctactgctgatgaatatgatggtaatactattctcaaatacaatta |
2892348 |
T |
|
| Q |
882 |
attagattaagg |
893 |
Q |
| |
|
||||||| |||| |
|
|
| T |
2892347 |
attagatgaagg |
2892336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 780 - 893
Target Start/End: Original strand, 3158138 - 3158251
Alignment:
| Q |
780 |
agggacacacatcacccaatggtatttgattcaatacaagaagaaagctgcttctgctactgctgatgaatatgatggtaatactattctcaaatacaat |
879 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3158138 |
agggacccacatcacacaatgggatttgattcaatacaagaagaaagctgctgctcctactgctgatgaatatgatggtaatactattctcaaatacaat |
3158237 |
T |
|
| Q |
880 |
tcattagattaagg |
893 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
3158238 |
taattagatgaagg |
3158251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 3157678 - 3157761
Alignment:
| Q |
160 |
aagactacaatgtagttagtcaggaattagactgttttgggttttagtaaggaatttactgagatgtaattttatcccaatagt |
243 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
3157678 |
aagactacaatgtagttagtcatgaattagactgttttgggttttagtaagaaatttactgagatgtaattttatccgaatagt |
3157761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 780 - 893
Target Start/End: Complemental strand, 2878056 - 2877938
Alignment:
| Q |
780 |
agggacacacatcacccaatggtatttgattcaatacaagaagaaagctgcttctgctactgctgatgaatatgatggtaatacta-----ttctcaaat |
874 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
2878056 |
agggacacacatcacacaatgggatttgattcaatacaagaagaaagctgctgctccttctgctgaagaatatgatggtaatactattctattctcaaat |
2877957 |
T |
|
| Q |
875 |
acaattcattagattaagg |
893 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
2877956 |
acaattaattaggttaagg |
2877938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 597 - 691
Target Start/End: Complemental strand, 2878218 - 2878124
Alignment:
| Q |
597 |
ttccagaatttggtaaaagaagattgatttggaaatgactggcggcggcgctaacaatcaatttgatgaacttacgtatggaaaaagtgagtgag |
691 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2878218 |
ttccaggatttggtataagaagattgatttggaaatgtatggcggcgtcgctaacaatcaatttgatgaatctacgtatggaaaaagtgagtgag |
2878124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 609 - 664
Target Start/End: Original strand, 2793726 - 2793781
Alignment:
| Q |
609 |
gtaaaagaagattgatttggaaatgactggcggcggcgctaacaatcaatttgatg |
664 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
2793726 |
gtaaaagaagattgatttggaaatgtatggcgtcggcgctaacaatgaatttgatg |
2793781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 3156943 - 3157008
Alignment:
| Q |
103 |
tacacatttacaattttcatat---atcacttgaatacatattgattaattgtgttagtgaagact |
165 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3156943 |
tacacatttattattttcatatcatatcacttgaatacatattgattcattgtgttagtgaagact |
3157008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University