View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_10 (Length: 417)
Name: NF14967_low_10
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 155 - 378
Target Start/End: Complemental strand, 53649542 - 53649319
Alignment:
| Q |
155 |
gtgtagaatgcaccttataaaatataaattaccataatatgtaactaatgtaatcagcttgtaattatagctaacaagtaccttaaatagtattcaacta |
254 |
Q |
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| T |
53649542 |
gtgtagaatgcaccttataaaatataaattaccataatatgtaactaatgtaatcagcttgtaattatagctaacaagtaccttaaatagtattcaacta |
53649443 |
T |
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| Q |
255 |
attctaattattatccaaatatatctaatatgatcaacaagtagaatagtggctgaataacttgattgcattttaaaattagtttgttgttattttatat |
354 |
Q |
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| T |
53649442 |
attctaattattatccaaatatatctaatatgatcaacaagtagaatagtggctgaataacttgattgcatttttaaattagtttgttgttattttatat |
53649343 |
T |
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| Q |
355 |
ttattttcagctcattgtaaatcc |
378 |
Q |
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| T |
53649342 |
ttattttcagctcattgtaaatcc |
53649319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 53649697 - 53649615
Alignment:
| Q |
1 |
ccttagtatccaaactcaaattggttttatttacaccttcatgagtttgatggggatgatatgatgagaagataaaggccagc |
83 |
Q |
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| T |
53649697 |
ccttagtatccaaactcaaattggttttatttacaccttcatgagtttgatggggatgatatgatgagaagataaaggccagc |
53649615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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