View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_11 (Length: 403)
Name: NF14967_low_11
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 235 - 403
Target Start/End: Complemental strand, 30223406 - 30223238
Alignment:
| Q |
235 |
ccaactaataaaaccttatgtaaccgtaaattagtctttaacatatatgttagttggtgcagcgtcctaaagattcctttgtacaaggtaatttgttcat |
334 |
Q |
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| T |
30223406 |
ccaactaataaaaccttatgtaaccgtaaattagtctttaacatatatgttagttggtgcagcgtcctaaagattcctttgtacaaggtaatttgttcat |
30223307 |
T |
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| Q |
335 |
gaacagtggtgcttaactgtattgaaatgcctctgttagttggatccatgttgtttaattgaagttgtc |
403 |
Q |
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| T |
30223306 |
gaacagtggtgcttaactgtattgaaatgcctctgttagttggatccatgttgtttaattgaagttgtc |
30223238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 30224415 - 30224292
Alignment:
| Q |
112 |
cagtaacaataataattagagcatgtcttaaaaagtttaataataataataatttcaaaccttacatatcaaaaccgcatattgtctcctatttaaattg |
211 |
Q |
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| T |
30224415 |
cagtaacaataataattagagcatgtcttaaaaaatttaataataataataatttcaaaccttaaatatcaaaaccgcatattgtctcctatttaaattg |
30224316 |
T |
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| Q |
212 |
tttgctcctttacaaaattgtagc |
235 |
Q |
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| T |
30224315 |
tttgctcctttacaaaattgtagc |
30224292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 41941600 - 41941704
Alignment:
| Q |
298 |
gtcctaaagattcctttgtacaaggtaatttgttcatgaacagtggtgcttaactgtattgaaatgcctctgttagttggatccatgttgtttaattgaa |
397 |
Q |
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| T |
41941600 |
gtcctaaagattcctctatacaaggtaatttatccgtgaactgtggtacttcactgtatttaaatgcctctgttagttggatccatgttgtgtaattgaa |
41941699 |
T |
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| Q |
398 |
gttgt |
402 |
Q |
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||||| |
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| T |
41941700 |
gttgt |
41941704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 9634620 - 9634580
Alignment:
| Q |
358 |
gaaatgcctctgttagttggatccatgttgtttaattgaag |
398 |
Q |
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| T |
9634620 |
gaaatgcctatgttagttggatccatgttgtttaattgaag |
9634580 |
T |
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