View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_12 (Length: 381)
Name: NF14967_low_12
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 3856595 - 3856940
Alignment:
| Q |
19 |
aaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaatcaagacctctcatttctagacaatataaatggcgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3856595 |
aaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaaccaagacctctcatttctagacaatataaatggcgtt |
3856694 |
T |
|
| Q |
119 |
tctgatgagaacaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacacca |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856695 |
tctgatgagaaaaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacacca |
3856794 |
T |
|
| Q |
219 |
taatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattctttcagtcg |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3856795 |
taatacaggttgttgatggtgatgaataaaaatattttaaatagcatgaag----ttatcttatttatattcaactaacattaattcattctttcagtcg |
3856890 |
T |
|
| Q |
319 |
gtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856891 |
gtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
3856940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 3865352 - 3865697
Alignment:
| Q |
19 |
aaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaatcaagacctctcatttctagacaatataaatggcgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3865352 |
aaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaaccaagacctctcatttctagacaatataaatggcgtt |
3865451 |
T |
|
| Q |
119 |
tctgatgagaacaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacacca |
218 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3865452 |
tctgatgagaaaaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacacca |
3865551 |
T |
|
| Q |
219 |
taatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattctttcagtcg |
318 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3865552 |
taatacaggttgttgatggtgatgaataaaaatattttaaatagcatgaag----ttatcttatttatattcaactaacattaattcattctttcagtcg |
3865647 |
T |
|
| Q |
319 |
gtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3865648 |
gtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
3865697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 5441261 - 5440930
Alignment:
| Q |
19 |
aaacgagggtgagaaaaaccgtatacataagaaactattgaaattggctcttggcaagaaaaatcaagacctctcatttctagacaatataaatggcgtt |
118 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||| || |||||||||| | ||||||| | | |
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| T |
5441261 |
aaacgaaggtgaaaaaaaccgtatacataagaaactattggaattgactcttggcaagagaaaccaagacctttcttttctagacagtgtaaatggtgct |
5441162 |
T |
|
| Q |
119 |
tctgatgagaacaagataaagggttatatagaggcaccaccagatttagacaaaaacgaagataataattctagtgcttcattcaagaatttatacacca |
218 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| || || |||||| || || | ||| ||| || |||||||||||||||||||||||||||| |
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| T |
5441161 |
tctaatgagagcaagataaagggttatatagaggaacactcatgtttagagaagaatggagagaat--gtc-agtgcttcattcaagaatttatacacca |
5441065 |
T |
|
| Q |
219 |
taatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattcaactaatattaattcattctttcagtcg |
318 |
Q |
| |
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|| ||||||||||| |||| || ||||||||||||||||||||| || || ||| ||| ||||||||||||||||| |||| | |||| ||| ||||| |
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| T |
5441064 |
tagtacaggttgttaatgtcgacgaataaaaatattttaaatagtat-aaatta---atcctatttatattcaactaacattagtgcatttttttagtcg |
5440969 |
T |
|
| Q |
319 |
gtgcaacaagatgaagaactgaaagcttttcagaaaaca |
357 |
Q |
| |
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||||| | || ||||||||| ||||||||||| |||||| |
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| T |
5440968 |
gtgcagcgaggtgaagaactaaaagcttttcaaaaaaca |
5440930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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