View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_13 (Length: 365)
Name: NF14967_low_13
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_13 |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 2558781 - 2558951
Alignment:
| Q |
18 |
aaagcatgtgtagatgctaatgcataagcaaaagggtctggtttgcatttatattcaactattcggttatat--cattgaatcaattgtctattttgctc |
115 |
Q |
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| T |
2558781 |
aaagcatgtgtagatgctaatgcataagcata-gggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctc |
2558879 |
T |
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| Q |
116 |
agcaacggaagtcaacaagtaaaatggatttcgtgtcgtttt-cagacatggaaatatatgatgagggataa |
186 |
Q |
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| T |
2558880 |
aacatcggaagtcgacaggtaaaatgaatttcatgtcgttttccagacatggaaacatatgatgagggataa |
2558951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 2551548 - 2551593
Alignment:
| Q |
312 |
aaaactgccatacttactgttatataaaggacctaaaaattcttct |
357 |
Q |
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| T |
2551548 |
aaaactggcatacttactgttatataaaggacctaaaaattcttct |
2551593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 2559163 - 2559227
Alignment:
| Q |
292 |
tttgatattttatttttgataaaactgccatacttactgttatataaaggacctaaaaattcttc |
356 |
Q |
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| T |
2559163 |
tttgatgttttatttttgataaaaccggcatacttactattatacgaaggactgaaaaatccttc |
2559227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 15994 - 15948
Alignment:
| Q |
292 |
tttgatattttatttttgataaaactgcc---atacttactgttata |
335 |
Q |
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| T |
15994 |
tttgatattttatttttgataaaactggcataatacttactgttata |
15948 |
T |
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