View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_15 (Length: 309)
Name: NF14967_low_15
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 46956046 - 46955753
Alignment:
| Q |
1 |
tccataaagcaattaatcaggatgctccaccagttgatgatccgccaattgtggactcattgtttgatctcgatagagcaatcaatcatgatggtcacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46956046 |
tccataaagcaattaatcaggatgctccaccagttgatgatccgccaattgtggactcattgtttgatctcgatagagcaatcaatcatgatggtcacac |
46955947 |
T |
|
| Q |
101 |
catgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatgggacttctttttggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46955946 |
catgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatgggacttctttttggaat |
46955847 |
T |
|
| Q |
201 |
ttcttcaatatatggtctgaaatatatcaagctcaagcaaaagatcatgatgttctcatctcgcatcaaccttttcataatcggtggttcctag |
294 |
Q |
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| T |
46955846 |
ttcttcaatatatggtctgaaatatatcaagctcaagcaaaagatcatgatgttctcatctcgcatcaaccttttcataatcggtggttcctag |
46955753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 46958875 - 46958667
Alignment:
| Q |
28 |
caccagttgatgatccgccaattgtggactcattgtttgatctcgatagagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcac |
127 |
Q |
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|||| ||||||| ||| |||||||| || ||||| ||||||||| | | ||||||||| || || |||||||||||||| ||| |||| ||||||||||| |
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| T |
46958875 |
cacctgttgatgttcctccaattgttgagtcattctttgatctcaacaaagcaatcaaccacgacggtcacaccatgccattgttatcaattcaagtcac |
46958776 |
T |
|
| Q |
128 |
ggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatgggacttctttttggaatttcttcaatatatggtctgaaatatat |
227 |
Q |
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| T |
46958775 |
agagctagtggatggtgttttcataggttgttccctgaatcattgtattggtgatggtacctctttctggaatttttttaatatatggtctgagatattt |
46958676 |
T |
|
| Q |
228 |
caagctcaa |
236 |
Q |
| |
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||| ||||| |
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| T |
46958675 |
caatctcaa |
46958667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 46951653 - 46951479
Alignment:
| Q |
57 |
tcattgtttgatctcgatagagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggtt |
156 |
Q |
| |
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|||||||||||||| ||| ||||||||| || || |||||||||||||||||| ||||||| |||||||| || ||| ||||||||||||||||||| |
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| T |
46951653 |
tcattgtttgatcttaataaagcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggtt |
46951554 |
T |
|
| Q |
157 |
gttccatgaaccattgtattggtgatgggacttctttttggaatttcttcaatatatggtctgaaatatatcaag |
231 |
Q |
| |
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| T |
46951553 |
gttctatgaatcactatattggtgatggaacttcttattggaatttctttaatacatggtctgaaatatttcaag |
46951479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 47001820 - 47001699
Alignment:
| Q |
87 |
catgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatggga |
186 |
Q |
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|||||||||||||||||| | ||| | || ||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
47001820 |
catgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcattgtattggtgatggaa |
47001721 |
T |
|
| Q |
187 |
cttctttttggaatttcttcaa |
208 |
Q |
| |
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| ||| ||||||||||||||| |
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| T |
47001720 |
cagcttattggaatttcttcaa |
47001699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 46998140 - 46998010
Alignment:
| Q |
75 |
agagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgta |
174 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| | ||| | ||||||||||| || |||||| |||| ||||||| ||||||||||||||||| ||||||| |
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| T |
46998140 |
agagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgta |
46998041 |
T |
|
| Q |
175 |
ttggtgatgggacttctttttggaatttctt |
205 |
Q |
| |
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|||||||||| ||| || |||||||||||| |
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| T |
46998040 |
ttggtgatggaactggttattggaatttctt |
46998010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 46981062 - 46980931
Alignment:
| Q |
77 |
agcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtatt |
176 |
Q |
| |
|
|||| |||| ||||||||||| |||||| | ||| | || ||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||| || |
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| T |
46981062 |
agcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctt |
46980963 |
T |
|
| Q |
177 |
ggtgatgggacttctttttggaatttcttcaa |
208 |
Q |
| |
|
||||||| || ||| ||||||||||||||| |
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| T |
46980962 |
tgtgatggaacagcttattggaatttcttcaa |
46980931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 46995892 - 46995757
Alignment:
| Q |
75 |
agagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgta |
174 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| | ||| | |||||||||||||| |||||| || ||||||||||||||||||||||||||||| | |
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| T |
46995892 |
agagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacgctg |
46995793 |
T |
|
| Q |
175 |
ttggtgatgggacttctttttggaatttcttcaata |
210 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||| |||| |
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|
| T |
46995792 |
ttggtgatggaactgcttattggaatttctttaata |
46995757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 46975065 - 46974947
Alignment:
| Q |
87 |
catgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgtattggtgatggga |
186 |
Q |
| |
|
||||||||||| |||||| | || || | |||||||| || |||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
46975065 |
catgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgtataggtgatggga |
46974966 |
T |
|
| Q |
187 |
cttctttttggaatttctt |
205 |
Q |
| |
|
|| || |||||||||||| |
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| T |
46974965 |
ctggttattggaatttctt |
46974947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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