View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14967_low_29 (Length: 204)
Name: NF14967_low_29
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 7293673 - 7293472
Alignment:
| Q |
1 |
ggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatatttttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7293673 |
ggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatctttttta |
7293574 |
T |
|
| Q |
101 |
acgatctttcaaggaatgacttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgagcctttgcta |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7293573 |
acgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaaatcaaaactgaaatgagcccttgcta |
7293474 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
|
|
| T |
7293473 |
ct |
7293472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 7298147 - 7297957
Alignment:
| Q |
1 |
ggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatatttttta |
100 |
Q |
| |
|
|||| ||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
7298147 |
ggaccaaacactttgtttgtggtatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatatttttta |
7298048 |
T |
|
| Q |
101 |
acgatctttcaaggaatgacttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgag |
191 |
Q |
| |
|
| ||| |||| | ||||||||||||||||| |||||||||||||| | ||||||| | |||| | ||||||||||||||| ||||||| |
|
|
| T |
7298047 |
atgatgtttctggaaatgacttcaacaacatatttaagtcacttgacaactttaaagagaaactgcaagatgaaatcaaaactaaaatgag |
7297957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University