View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_3 (Length: 616)
Name: NF14967_low_3
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 602
Target Start/End: Complemental strand, 12536168 - 12535576
Alignment:
| Q |
10 |
acatcatcatcctcctctaagtctaacaatattaatcctatggttgttatctcatgcgagcttacaggtatggctgtttcacagttcaaatccatgctat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12536168 |
acatcatcatcctcctctaagtctaacaatattaatcctatggttgttatctcatgcgagcttacaggtatggctgtttcacagttcaaatccatgctat |
12536069 |
T |
|
| Q |
110 |
ctactagtactaggggtctctattccatatctgattataactacattttatcttcccttagctcccagggtttgtctggtaccattcttagacttggtcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
12536068 |
ctactagtactaggggtctctattccatatctgattataactacattttatcttcccttagctcccagggtttgtctgatactattcttagacttggtcg |
12535969 |
T |
|
| Q |
210 |
tctgtgggacgaatcccaaacccataataatgttttcccaaacgttgatacttggaaaatcctcatcgactgtcattgtgccactggtaacatgtcctcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12535968 |
tctgtgggacgaatcccaaacccataataatgttttcccaaacgttgatacttggaaaatcctcatcgactgtcattgtgccactggtaacatgtcctcg |
12535869 |
T |
|
| Q |
310 |
gctttctctctattccacaatatcattaaagccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgtgatagaggccagattt |
409 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12535868 |
gctttctgtctattccacaatatcattaaagccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgtgatagaggccagattt |
12535769 |
T |
|
| Q |
410 |
ctaaatcaattatgttttttaattactccatcttaaagggttttgagttggacgatcgtagttatgatattctaatccattgtttatgtgggataggaga |
509 |
Q |
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| T |
12535768 |
ctaaagcaattatgttttttaattactccatcttaaagggttttgagttggacgattgtagttatgatattctaattcattgtttatgtgggataggaga |
12535669 |
T |
|
| Q |
510 |
aattaaaatggccacacacttgttgagacagagaccatgtgaacatgatactgttacttgttttgttcgcctcatggtggtgtatgcaaaagt |
602 |
Q |
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| T |
12535668 |
aattaaaatggccacacacttgttgagacagcgaccatgtgaacatgatactgttacttgttttgttcgcctcatggtggtgtatgcaaaagt |
12535576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 221 - 484
Target Start/End: Complemental strand, 12533453 - 12533190
Alignment:
| Q |
221 |
aatcccaaacccataataatgttttcccaaacgttgatacttggaaaatcctcatcgactgtcattgtgccactggtaacatgtcctcggctttctctct |
320 |
Q |
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| T |
12533453 |
aatccaaaacctataacaatatttccccaaacattgatacttggaaaatcctcaccagttgtcattgtgaatcgggtaacatgttctcagcattctagct |
12533354 |
T |
|
| Q |
321 |
attccacaatatcattaaagccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgtgatagaggccagatttctaaatcaatt |
420 |
Q |
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| T |
12533353 |
attccgtaaaatcattgaaactggtcgtcgtcctactacttccacattgaatgatctttttcgaggtttatgtctcagaggccagatttataaagcaatt |
12533254 |
T |
|
| Q |
421 |
atgttttttaattactccatcttaaagggttttgagttggacgatcgtagttatgatattctaa |
484 |
Q |
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||||||| ||||||| |||| ||||||||||| ||||| || ||| ||||||| |||||||| |
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| T |
12533253 |
atgttttataattacaccatactaaagggttttcagttgaaccatcatagttattctattctaa |
12533190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 310 - 517
Target Start/End: Original strand, 12540193 - 12540400
Alignment:
| Q |
310 |
gctttctctctattccacaatatcattaaagccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgtgatagaggccagattt |
409 |
Q |
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||||||||||||||||||| || ||| ||| |||||||||||||||| ||||||| |||||| || |||| | |||||||||| ||||||||||||| |
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| T |
12540193 |
gctttctctctattccacagaataattgaagacggtcatcgtcctactacttccacattgaatgatatttttcgaggtttatgtctcagaggccagattt |
12540292 |
T |
|
| Q |
410 |
ctaaatcaattatgttttttaattactccatcttaaagggttttgagttggacgatcgtagttatgatattctaatccattgtttatgtgggataggaga |
509 |
Q |
| |
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|||| |||||||||||| ||||||| |||| ||||||||||| ||||| || | | |||| |||| |||||||| |||||||| ||||||||| |
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| T |
12540293 |
ataaagcaattatgttttataattacaccatactaaagggttttcagttgaaccttgagacttattctattataatccatggtttatgtaagataggaga |
12540392 |
T |
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| Q |
510 |
aattaaaa |
517 |
Q |
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|| ||||| |
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| T |
12540393 |
aactaaaa |
12540400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 676928 - 676980
Alignment:
| Q |
341 |
ccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgt |
393 |
Q |
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||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
676928 |
ccggtcatcgtcctactacttccactttgaatcatcttttaaaaggtttatgt |
676980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 28238726 - 28238857
Alignment:
| Q |
268 |
atcctcatcgactgtcattgtgccactggtaacatgtcctcggctttctctctattccacaatatcattaaagccggtcatcgtcctactgcttccactt |
367 |
Q |
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||||||||| | ||||||| || | |||||||||||| || ||| ||||||| ||||| || ||||| | ||||||||| |||||||||| |||| |
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| T |
28238726 |
atcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctactgctggtactt |
28238825 |
T |
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| Q |
368 |
tgaattatcttttacaaggtttatgtgataga |
399 |
Q |
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|| ||| ||||||| | ||||| ||||||||| |
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| T |
28238826 |
tgtattctcttttatatggtttttgtgataga |
28238857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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