View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14967_low_9 (Length: 444)
Name: NF14967_low_9
Description: NF14967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14967_low_9 |
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| [»] scaffold0028 (4 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 125926 - 125757
Alignment:
| Q |
12 |
caaaggagaaaaggcttcaacttccgtaagggagggaaagcagggaaatccaacaaaagattttgaaaaggtgttttgaataaagcatatgtcacttgag |
111 |
Q |
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| T |
125926 |
caaaggagaaaaggcttcaacttccgtaagggagggaaagcatggaaatccaacaaaagattttgaaaaggtgttttgaataaagcatatgtcacttcag |
125827 |
T |
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| Q |
112 |
ttgtacttacacttgctgagaaagagaaactctcttttcaaatcttctccttgcaaactcagttctacca |
181 |
Q |
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| T |
125826 |
ttgtacttacacttgctgagaaagagaaactctcttttcaaatcttctccttgcaaactcagttctacca |
125757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 125644 - 125566
Alignment:
| Q |
294 |
cctttgttgttattttgcaggtgatactcaactgttcatcttcctggtaataatttcaaaacgtttatactgaatattc |
372 |
Q |
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| T |
125644 |
cctttgttgttattttgcaggtgatactcaactgttcatcttcctggtaataatttcaaaacgtttatattgaatattc |
125566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 125469 - 125425
Alignment:
| Q |
400 |
cttatttgctcaaatcctgttatctatcttttttacgcttattgt |
444 |
Q |
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| T |
125469 |
cttatttgctcaaatgctgttatctatcttttttacgctttttgt |
125425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 125539 - 125495
Alignment:
| Q |
400 |
cttatttgctcaaatcctgttatctatcttttttacgcttattgt |
444 |
Q |
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| T |
125539 |
cttatttgctcaaatcccgttatctatcttttttatgcttattgt |
125495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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