View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14968_high_1 (Length: 675)

Name: NF14968_high_1
Description: NF14968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14968_high_1
NF14968_high_1
[»] chr4 (1 HSPs)
chr4 (25-657)||(43615423-43616064)


Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 25 - 657
Target Start/End: Complemental strand, 43616064 - 43615423
Alignment:
Q  25 taaatgaaagagataagagagaacgagatgttgaaaaactaaagataaacatcattattcaaaattcaatgtgttttaggagcacaatgcatagtataaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43616064 taaatgaaagagataagagagaacgagatgttgaaaaactaaagataaacatcattattcaaaaatcaatgtgttttaggagcacaatgcatagtataaa 43615965  T
Q  125 gaaacaatagtactagtagcattcttggaagaatacctaatgcagtgagagccatgtgac------acatacagaatcaaaggcttagccttgccatgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      ||||||||||||||| ||||||||||||||||||    
T  43615964 gaaacaatagtactagtagcattcttggaagaatacctaatacagtgagagccatgtgactgatgcacatacagaatcaaaagcttagccttgccatgac 43615865  T
Q  219 caaaagactattatgactgaaagtgctccttgggttttgagagatagtattctttacaatatttggccgcccc-aatgagtctcaaatgtagccgaata- 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  43615864 caaaagactattatgagtgaaagtgctccttgggttttgagagatagtattctttacaatatttggccgcccccaatgagtctcaaatgtagccgaatgg 43615765  T
Q  317 tttatattttgggtttcgttaatcaatgcccttaaaaaattcaatactaaaaactttgttttataaatataatttttcacttttatgttagcaaatttac 416  Q
    |||||||||||||||||||||||||||||| |||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  43615764 tttatattttgggtttcgttaatcaatgcctttaagaaattcattagtaaaaattttgttttataaatataatttttcacttttatgttagtaaatttac 43615665  T
Q  417 ttattttaacactttaatcaatatcttaatgatactcgttagcattctccgaatactttttcatatacttgtaacatgtgttttttctgttaaat-nnnn 515  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||         
T  43615664 ttattttaacactttaattaatatcttaatgatactcgttagcattctccgaataccttttcatgtacttgtaacatgtgttttttctgttaaataaaaa 43615565  T
Q  516 nnnnnnncttctgtagtgaaaaatatctgttggagtatatacttggtggggcctttacaaattgaagtccatgtctaacgtatttgtctcaaccctatag 615  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615564 aaaaaaacttctgtagtgaaaaatatctgttggagtatatacttggtggggcctttacaaattgaagtccatgtctaacgtatttgtctcaaccctatag 43615465  T
Q  616 catagcatggtataggtcatcccattgaattgatgatgatgt 657  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  43615464 catagcatggtataggtcatcccattgaattaatgatgatgt 43615423  T

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