View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14968_high_4 (Length: 360)
Name: NF14968_high_4
Description: NF14968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14968_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 12896953 - 12896682
Alignment:
| Q |
1 |
agaagttcatcaaaaaccatgaagtctttgacgaaatggtgagaaaa-tcagatgatgcttgttttcatgatataacattcacaaacatcatcttgttat |
99 |
Q |
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| T |
12896953 |
agaagttcatcaaaaaccatgaagtctttgacgaaatggtgagaaaaatcagatgatgctcgttttcatgatataacat-cacaaacatcatcttgttac |
12896855 |
T |
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| Q |
100 |
atctatatggatgtcattattcttatgaattattgtgattcaaccttgttcggatatgcttagcttgagaaatactagaagggatttaatagttctaaag |
199 |
Q |
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| T |
12896854 |
atctatatggatgtcattattcttatgaattattgtgattcaaccttgttcggatatgcttaacttgagaaatactagaagagacttaatagttctaaag |
12896755 |
T |
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| Q |
200 |
atttgtgaaatgtgaatatgacaattcaacctcattctatttgacttctaacatgaacctactacctttcatt |
272 |
Q |
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| T |
12896754 |
atttgtgaaatgtgaatatgacaattcaacctcattctatttgacttctaacatgaacctactacctttcatt |
12896682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 12896621 - 12896578
Alignment:
| Q |
307 |
atatcaagcctgcatttttcttcttgatttttctaaattttctt |
350 |
Q |
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| T |
12896621 |
atatgaagcctgcatttttcttcttgatttttctaaattttctt |
12896578 |
T |
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