View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14968_high_5 (Length: 339)

Name: NF14968_high_5
Description: NF14968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14968_high_5
NF14968_high_5
[»] chr4 (17 HSPs)
chr4 (96-281)||(53994604-53994789)
chr4 (99-277)||(47304538-47304716)
chr4 (93-281)||(43137078-43137265)
chr4 (127-281)||(15521732-15521886)
chr4 (93-216)||(1458710-1458833)
chr4 (120-281)||(31763228-31763388)
chr4 (151-280)||(34458656-34458785)
chr4 (128-280)||(47681616-47681768)
chr4 (108-278)||(13610818-13610988)
chr4 (118-247)||(23602385-23602514)
chr4 (111-231)||(7291333-7291453)
chr4 (150-211)||(19901527-19901588)
chr4 (93-212)||(50689831-50689950)
chr4 (126-232)||(51084643-51084749)
chr4 (128-216)||(38069139-38069226)
chr4 (147-277)||(52254785-52254915)
chr4 (127-280)||(1180060-1180213)
[»] chr7 (11 HSPs)
chr7 (93-280)||(9459173-9459360)
chr7 (96-280)||(5738536-5738720)
chr7 (108-278)||(9626258-9626428)
chr7 (109-232)||(3525484-3525607)
chr7 (155-280)||(12218623-12218748)
chr7 (128-211)||(3406170-3406253)
chr7 (127-238)||(4919685-4919796)
chr7 (120-214)||(26425742-26425836)
chr7 (99-163)||(12218372-12218436)
chr7 (159-211)||(21524257-21524309)
chr7 (155-212)||(27157124-27157181)
[»] chr2 (13 HSPs)
chr2 (93-220)||(40355558-40355685)
chr2 (99-280)||(38855090-38855271)
chr2 (126-280)||(34640476-34640630)
chr2 (97-280)||(38119926-38120109)
chr2 (97-232)||(41533416-41533551)
chr2 (117-202)||(12069043-12069128)
chr2 (120-232)||(38064467-38064579)
chr2 (155-238)||(30491111-30491194)
chr2 (97-215)||(42471854-42471972)
chr2 (116-281)||(5306035-5306200)
chr2 (147-286)||(19090301-19090440)
chr2 (147-231)||(17913894-17913978)
chr2 (155-281)||(30618156-30618282)
[»] chr5 (9 HSPs)
chr5 (120-281)||(34582978-34583139)
chr5 (93-280)||(40896988-40897175)
chr5 (127-251)||(16719670-16719794)
chr5 (155-280)||(10542335-10542460)
chr5 (128-237)||(31224210-31224319)
chr5 (107-247)||(5927145-5927285)
chr5 (109-238)||(12621811-12621941)
chr5 (126-231)||(28283634-28283739)
chr5 (155-236)||(29454658-29454739)
[»] chr1 (12 HSPs)
chr1 (99-280)||(40707716-40707898)
chr1 (150-281)||(38669503-38669634)
chr1 (97-232)||(3289544-3289679)
chr1 (97-219)||(9857244-9857366)
chr1 (97-231)||(13258774-13258907)
chr1 (150-272)||(51127104-51127226)
chr1 (111-228)||(35362448-35362564)
chr1 (155-211)||(8772545-8772601)
chr1 (110-204)||(13642794-13642888)
chr1 (155-281)||(28093551-28093677)
chr1 (149-274)||(31375011-31375136)
chr1 (126-232)||(13142857-13142963)
[»] chr8 (7 HSPs)
chr8 (97-280)||(16576580-16576762)
chr8 (128-280)||(29909264-29909416)
chr8 (120-213)||(6636192-6636285)
chr8 (150-211)||(29443052-29443113)
chr8 (126-238)||(6628400-6628511)
chr8 (97-232)||(18311156-18311287)
chr8 (155-212)||(3295187-3295244)
[»] chr6 (8 HSPs)
chr6 (116-280)||(16166196-16166361)
chr6 (110-280)||(6138552-6138723)
chr6 (97-213)||(30591368-30591484)
chr6 (110-216)||(697842-697948)
chr6 (129-237)||(15055909-15056017)
chr6 (110-212)||(22292823-22292925)
chr6 (110-204)||(22298389-22298483)
chr6 (106-179)||(17196554-17196627)
[»] chr3 (9 HSPs)
chr3 (109-208)||(44028215-44028314)
chr3 (107-280)||(9798503-9798676)
chr3 (147-281)||(50385102-50385236)
chr3 (160-280)||(53199944-53200064)
chr3 (107-278)||(4957569-4957740)
chr3 (169-281)||(43107881-43107993)
chr3 (128-214)||(54739189-54739275)
chr3 (218-280)||(29652861-29652923)
chr3 (107-192)||(6130653-6130738)
[»] scaffold0004 (1 HSPs)
scaffold0004 (126-277)||(35199-35345)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 281
Target Start/End: Complemental strand, 53994789 - 53994604
Alignment:
Q  96 gtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccat 195  Q
    |||||||||  ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || || |||    
T  53994789 gtatacgggtcggcctaataggcttgatatgcttttttataagcctaagtctagcctaattaaattaataggctttttaaaaagctcaactttgactcat 53994690  T
Q  196 ttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccctaa 281  Q
    ||||||||||||||||||| | ||||||||||||||| |||||  ||||||| ||| ||| ||||| | |||||||||||||||||    
T  53994689 ttattaaacgagttaggccaaaccgggcttttagtaggccgagccataggcccctgacaaacggccaggcctattcccacccctaa 53994604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 99 - 277
Target Start/End: Complemental strand, 47304716 - 47304538
Alignment:
Q  99 tacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccattta 198  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||     |||||||||||| ||||| ||||||||||| |||||||| || ||||||    
T  47304716 tacgggccggcctgataggcatgataagcttttttgtaagcctaagcccgacctaattaaattgataggatttttaaaaagttcaagcttgactcattta 47304617  T
Q  199 ttaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccc 277  Q
    ||||||||||||||||||| |||||||||||||| |||||  ||||||| ||| ||  ||||||||||||||| |||||    
T  47304616 ttaaacgagttaggccgagtcgggcttttagtagcccgagccataggcccctgacagacggcctgacctattctcaccc 47304538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 43137265 - 43137078
Alignment:
Q  93 ctcgtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    ||||||||||||| | |||||||| ||||||  |||||||| || |||||||  | ||||||||||||||||||| |||||||||||||||||||| ||     
T  43137265 ctcgtatacgggccgacctgatagacttgatgggctttttttta-gcctaagcctggcctaattaaattaatagggtttttaaaaagctcaagcttgaca 43137167  T
Q  193 catttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccctaa 281  Q
    ||||||||||||||| |||||||||||||| ||| | ||| |||||  ||||||| ||| |||||| |||| |||||||||||||||||    
T  43137166 catttattaaacgagctaggccgagccgggttttcaataggccgagccataggcccctgacaagcgacctggcctattcccacccctaa 43137078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 15521732 - 15521886
Alignment:
Q  127 cttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttt 226  Q
    |||||||||||| |||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||    
T  15521732 cttttttataagtctaagtctgacctaattaaattaataggctttttaaaaagctcaagtttaacccatttattaaacaagttaggtcgagccggacttt 15521831  T
Q  227 tagtagaccgagttataggcctctggcaagcggcctgacctattcccacccctaa 281  Q
    |||||| | |||| ||||||| ||| | || || ||||||||||||||| |||||    
T  15521832 tagtaggctgagtcataggcccctgacgagtggtctgacctattcccactcctaa 15521886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 1458710 - 1458833
Alignment:
Q  93 ctcgtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||| |||||     
T  1458710 ctcgtatacgggccggcctgataggcttgatagacttttttataagcctaagtctggcctaattaaattaataggtttttaaaaaagctcaagtttaact 1458809  T
Q  193 catttattaaacgagttaggccga 216  Q
    ||||||||||||||| ||||||||    
T  1458810 catttattaaacgagctaggccga 1458833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 31763388 - 31763228
Alignment:
Q  120 tgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagcc 219  Q
    |||||||||||| ||||||||||| | |||| || |||||||||||||||||||||||||||||   |||||| |||||||||| |||||||| || | |    
T  31763388 tgataagcttttctataagcctaa-tctagcatatttaaattaataggctttttaaaaagctcatatttaacctatttattaaatgagttaggtcgggtc 31763290  T
Q  220 gggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccctaa 281  Q
    ||||||||||||| |||| | ||||||| ||| | |||||| ||||||||||||||||||||    
T  31763289 gggcttttagtaggccgaatcataggcccctgacgagcggcttgacctattcccacccctaa 31763228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 34458656 - 34458785
Alignment:
Q  151 ctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctct 250  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||  |||||| ||| |||||  ||||||| ||    
T  34458656 ctaattaaattaataggctctttaaaaagctcaagtttgacccatttattaaacgagttaggccgacccgaacttttactaggccgagccataggcccct 34458755  T
Q  251 ggcaagcggcctgacctattcccaccccta 280  Q
    | | ||||||||||||||||||||||||||    
T  34458756 gacgagcggcctgacctattcccaccccta 34458785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 47681768 - 47681616
Alignment:
Q  128 ttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctttt 227  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  47681768 ttttttataagcctaagcctgacctaattaaattaatagactttttaaaaatctcaagcttgacccatttattaaacgagctaggccgagccggactttt 47681669  T
Q  228 agtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||| |||| | |||||||  || | |||||| || |||| |||||| ||||    
T  47681668 agtaggccgaatcataggcccttgacgagcggcttggcctactcccactccta 47681616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 278
Target Start/End: Complemental strand, 13610988 - 13610818
Alignment:
Q  108 gcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgag 207  Q
    ||||||||||| ||||| |||||| |||||||||||   || || | ||||||||||| ||||||||||||||||| | || ||| ||||||||||||||    
T  13610988 gcctgataggcctgataggcttttctataagcctaaacctaacccatttaaattaataagctttttaaaaagctcatgtttgacctatttattaaacgag 13610889  T
Q  208 ttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccc 278  Q
    ||||| || |||| ||||||||||| ||| |  ||||||| ||| ||||| ||||| | ||||||||||||    
T  13610888 ttaggtcgggccgagcttttagtaggccgggccataggcccctgacaagcagcctggcttattcccacccc 13610818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 23602385 - 23602514
Alignment:
Q  118 cttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgag 217  Q
    |||||||  ||||||||||||||||||  |  ||||||||||||||||| |||||||||||| ||||  ||||| ||||||||||||||||||||||||     
T  23602385 cttgatagacttttttataagcctaagcttgacctaattaaattaatagactttttaaaaagttcaaatttaactcatttattaaacgagttaggccgaa 23602484  T
Q  218 ccgggcttttagtagaccgagttataggcc 247  Q
    ||| ||||||| ||| |||||  |||||||    
T  23602485 ccgagcttttaataggccgagccataggcc 23602514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 7291333 - 7291453
Alignment:
Q  111 tgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagtta 210  Q
    ||||||| ||||||  ||||||||||| | |||||    ||||||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||    
T  7291333 tgataggtttgatagacttttttataatcataagtcagacctaattaaattaataggctttttaaaaagctcaaacttgactcatttactaaacgagtta 7291432  T
Q  211 ggccgagccgggcttttagta 231  Q
    |||||| |||| |||||||||    
T  7291433 ggccgaaccggtcttttagta 7291453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 19901588 - 19901527
Alignment:
Q  150 cctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttag 211  Q
    |||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  19901588 cctatttaaattaatatgctttttaaaaagctcaagcttgacctatttattaaacgagttag 19901527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 50689831 - 50689950
Alignment:
Q  93 ctcgtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    |||||||||||||  ||||||||| | ||||||| ||||||||  | |||||  || || | || |||||||| |||||||||||||||||  |||| ||    
T  50689831 ctcgtatacgggccagcctgatagacatgataagtttttttatccgtctaagcctaacccattttaattaatatgctttttaaaaagctcatacttagcc 50689930  T
Q  193 catttattaaacgagttagg 212  Q
     |||||||||||||||||||    
T  50689931 tatttattaaacgagttagg 50689950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 51084643 - 51084749
Alignment:
Q  126 gcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctt 225  Q
    |||||| ||||||||| ||  ||||||| ||||||||||  |||||||||||||||  ||| ||||| ||||| |||||||| ||||| ||||||||| |    
T  51084643 gcttttctataagcctgagcctagcctatttaaattaatgagctttttaaaaagcttgagcctaacctatttaataaacgagctaggctgagccgggcat 51084742  T
Q  226 ttagtag 232  Q
    | |||||    
T  51084743 taagtag 51084749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 38069139 - 38069226
Alignment:
Q  128 ttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccga 216  Q
    ||||||||||| |||||  ||| ||| ||| |||||||||||||| ||||||||||   |||||| |||||||||||||||||| ||||    
T  38069139 ttttttataagtctaagcctagtctatttagattaataggctttt-aaaaagctcatatttaacctatttattaaacgagttagaccga 38069226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 52254915 - 52254785
Alignment:
Q  147 tagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggc 246  Q
    ||||||| ||||||||||  ||||| |||||||||  || ||||||  |||| ||||| | |||||||||||| | ||||  |||| ||| || ||||||    
T  52254915 tagcctatttaaattaatgagctttataaaaagcttgagtttaacctgtttaataaacaaattaggccgagccagactttaggtaggccgggtcataggc 52254816  T
Q  247 ctctggcaagcggcctgacctattcccaccc 277  Q
    | ||| | ||| ||||| |||||| ||||||    
T  52254815 ccctgacgagcagcctggcctatttccaccc 52254785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 1180213 - 1180060
Alignment:
Q  127 cttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttt 226  Q
    ||||| ||||||||| ||| ||||||| ||||||||||   ||||||||||||||  ||  | ||| ||||| ||||||||||||  ||||  || ||||    
T  1180213 cttttctataagccttagtctagcctatttaaattaatgaactttttaaaaagcttgagtattacctatttaataaacgagttagatcgagttggacttt 1180114  T
Q  227 tagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
     |||||  ||  | |||| || ||| | | |||||||||||||| |||||||||    
T  1180113 aagtagggcggttcatagacccctgacgaacggcctgacctatttccaccccta 1180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 9459173 - 9459360
Alignment:
Q  93 ctcgtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    ||||||||||||| |  ||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| ||     
T  9459173 ctcgtatacgggccgatctgataggcttgataggcttttttataagcctaagtctggcctaattaaatcaataggctttttaaaaagctcaagcttgact 9459272  T
Q  193 catttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    |||||||||||| || ||||||||||||||||||| ||||  ||||  ||||||||||  | ||| | |||||||| |||||||||||    
T  9459273 catttattaaacaagctaggccgagccgggctttttgtaggacgagccataggcctctaacgagcaggctgacctaatcccaccccta 9459360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 96 - 280
Target Start/End: Complemental strand, 5738720 - 5738536
Alignment:
Q  96 gtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccat 195  Q
    |||||||||| |  |||||||||||||||  |||||||||||||||||   | |||||||||||||||||| |||||||||||||||||  || ||||||    
T  5738720 gtatacgggccgttctgataggcttgatagacttttttataagcctaaacttggcctaattaaattaatagactttttaaaaagctcaaatttgacccat 5738621  T
Q  196 ttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    |||||||||||||||| | |||| |  |||||||||| || ||  ||||||| ||| | ||||||||| ||||||||||||||||    
T  5738620 ttattaaacgagttagactgagctgaacttttagtaggccaagccataggcccctgacgagcggcctggcctattcccaccccta 5738536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 9626258 - 9626428
Alignment:
Q  108 gcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgag 207  Q
    ||||||||||| ||||| |||||| |||||||||||   || || | ||||||||||| ||||||||||||||||| | || ||| ||||||||||||||    
T  9626258 gcctgataggcctgataggcttttctataagcctaaacctaacccatttaaattaataagctttttaaaaagctcatgtttgacctatttattaaacgag 9626357  T
Q  208 ttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccc 278  Q
    ||||| || |||| ||||||||||| ||| |  ||||||| ||| ||||| ||||| | ||||||||||||    
T  9626358 ttaggtcgggccgagcttttagtaggccgggccataggcccctgacaagcagcctggcttattcccacccc 9626428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 3525607 - 3525484
Alignment:
Q  109 cctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagt 208  Q
    ||||||| |||||||| |||||||||||||||||||  || || | |||||||||||| ||||||||||| |||| || | ||| |||||||||||||||    
T  3525607 cctgataagcttgataggcttttttataagcctaagcctaacccatttaaattaatagactttttaaaaatctcatgcctgacctatttattaaacgagt 3525508  T
Q  209 taggccgagccgggcttttagtag 232  Q
    ||||||| |||||||||| |||||    
T  3525507 taggccgggccgggctttcagtag 3525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 12218623 - 12218748
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggca 254  Q
    |||||||||||| |||||||||||||| ||| || || ||||||||||||||| |||||||||||| |||||||||||  ||||  ||||||| ||| |     
T  12218623 ttaaattaatagtctttttaaaaagcttaagtttgactcatttattaaacgagataggccgagccgagcttttagtaggtcgagccataggcccctgacg 12218722  T
Q  255 agcggcctgacctattcccaccccta 280  Q
     |||||||| |||||||||| |||||    
T  12218723 ggcggcctggcctattcccatcccta 12218748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 3406253 - 3406170
Alignment:
Q  128 ttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttag 211  Q
    ||||||||| |||||||  ||  ||| ||||||||||||| ||||||||||||||| |||||||| |||||||||| |||||||    
T  3406253 ttttttatatgcctaagcctaagctatttaaattaataggttttttaaaaagctcatgcttaacctatttattaaatgagttag 3406170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 4919796 - 4919685
Alignment:
Q  127 cttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttt 226  Q
    |||||||||||| |||||   | |||| ||||||||||||||||||||||||| ||||| || | |||| ||||||||||| |||||  ||| | |||||    
T  4919796 cttttttataagtctaagcccaacctatttaaattaataggctttttaaaaagttcaagtttgatccatctattaaacgagctaggctaagctgagcttt 4919697  T
Q  227 tagtagaccgag 238  Q
    |||||| |||||    
T  4919696 tagtaggccgag 4919685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 26425742 - 26425836
Alignment:
Q  120 tgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggcc 214  Q
    |||||||||||||||||||| ||||  | ||| | ||||||||| | ||||||||||||||| | |||| |||  ||||||||||||||||||||    
T  26425742 tgataagcttttttataagcttaagcctggcccatttaaattaacaagctttttaaaaagctaatgcttgacctttttattaaacgagttaggcc 26425836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 12218372 - 12218436
Alignment:
Q  99 tacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaa 163  Q
    ||||||| |||||||||| ||||||| |||||||||||||||||||    |||||||||||||||    
T  12218372 tacgggccggcctgatagacttgatatgcttttttataagcctaagcccggcctaattaaattaa 12218436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 21524257 - 21524309
Alignment:
Q  159 attaataggctttttaaaaagctcaagcttaacccatttattaaacgagttag 211  Q
    ||||||| ||||||||||||||| | |||||| | ||||||||||||||||||    
T  21524257 attaatatgctttttaaaaagctaatgcttaatctatttattaaacgagttag 21524309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 27157181 - 27157124
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttagg 212  Q
    ||||||||||||||||||||||||||| | | ||  || | |||||||||||||||||    
T  27157181 ttaaattaataggctttttaaaaagcttatgtttggccgagttattaaacgagttagg 27157124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 40355685 - 40355558
Alignment:
Q  93 ctcgtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |  ||||||||||||| |||||||||||||||||||||| || |||    
T  40355685 ctcgtatacgggctggcctgataggcttcataggcttttttataagcctaagtctgacctaattaaattagtaggctttttaaaaagctcaagtttgacc 40355586  T
Q  193 catttattaaacgagttaggccgagccg 220  Q
    ||||||||||||||||||||||||||||    
T  40355585 catttattaaacgagttaggccgagccg 40355558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 99 - 280
Target Start/End: Complemental strand, 38855271 - 38855090
Alignment:
Q  99 tacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccattta 198  Q
    ||||||| | |||||||| ||||||| |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| || |||||     
T  38855271 tacgggccgacctgatagacttgataggcttttttatgagcctaagcctagcctaattaaattaataggctttttaaaaagctcaagcttgactcatttt 38855172  T
Q  199 ttaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    |||||||||||||| |||||| |||||||||||| |||||  |||||||  || |  |||| ||| ||||||||||||||||    
T  38855171 ttaaacgagttaggtcgagcctggcttttagtaggccgagccataggccgttgacgggcggtctggcctattcccaccccta 38855090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 280
Target Start/End: Original strand, 34640476 - 34640630
Alignment:
Q  126 gcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctt 225  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||| || ||  ||||||||| |||| |||| ||||||||||||    
T  34640476 gcttttttataagcctaagttcggcctatttaaattaataggctttttaaaaagctcaagtttgacttatttattaatcgagctaggtcgagccgggctt 34640575  T
Q  226 ttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||||| |||||  ||||||| ||| |  |||| ||| ||||||||||||||||    
T  34640576 ttagtaggccgagccataggcccctgacgggcggtctggcctattcccaccccta 34640630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 97 - 280
Target Start/End: Original strand, 38119926 - 38120109
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| |  ||||||||||||||||| |||||||||||||||||     | ||||||||||||||||||||||||||||||||||||| |||||||    
T  38119926 tatacgggccgatctgataggcttgataagtttttttataagcctaagccctacataattaaattaataggctttttaaaaagctcaagcttgacccatt 38120025  T
Q  197 tattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||||| | | ||||||||||||| ||||| |||  |||||  |||||||  ||   ||| |||||  |||||||||||||||    
T  38120026 tattaaatgggctaggccgagccggactttttgtaagccgagccataggcccatgatgagcagcctggtctattcccaccccta 38120109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 41533551 - 41533416
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||  ||| ||||||||| |||| | ||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||  || |||    
T  41533551 tatacgggtcggcttgataggctcgataggtttttttataagcctaagcataacctatttaaattaataagctttttaaaaagctcaagcttggcctatt 41533452  T
Q  197 tattaaacgagttaggccgagccgggcttttagtag 232  Q
    ||||||||||  ||||||||||||  ||||||||||    
T  41533451 tattaaacgatctaggccgagccgaacttttagtag 41533416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 12069043 - 12069128
Alignment:
Q  117 gcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaa 202  Q
    |||||||| ||||||| |||||| ||||    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12069043 gcttgataggctttttaataagcttaagcccggcctaattaaattaataggctttttaaaaagctcaaacttaacccatttattaa 12069128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 38064579 - 38064467
Alignment:
Q  120 tgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagcc 219  Q
    ||||| |||||||||||||||||| |   |||||||||||||||||| |||||||||||| |||||||||||  |||||||||||||  ||||| ||  |    
T  38064579 tgataggcttttttataagcctaaatccggcctaattaaattaatagactttttaaaaagttcaagcttaacttatttattaaacgaactaggctgaatc 38064480  T
Q  220 gggcttttagtag 232  Q
    ||| |||||||||    
T  38064479 gggtttttagtag 38064467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 30491111 - 30491194
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgag 238  Q
    |||| ||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||| |||| |||||||||| |||||    
T  30491111 ttaagttaatagactttttaaaaagctcaagcttgactcatttattaaacaagttaggccgaaccggacttttagtaggccgag 30491194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 42471972 - 42471854
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| | ||| |||||| |||||| ||||||||||||||||||  || |||| ||||||||| || |||||||||||||||| |  |||||  ||    
T  42471972 tatacgggccgaccttataggcctgataatcttttttataagcctaagcctaacctatttaaattaacagactttttaaaaagctcatgtctaacctgtt 42471873  T
Q  197 tattaaacgagttaggccg 215  Q
    |||||||| ||||||||||    
T  42471872 tattaaacaagttaggccg 42471854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 281
Target Start/End: Original strand, 5306035 - 5306200
Alignment:
Q  116 ggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccg 215  Q
    |||||||||||||||||||||||| ||||  || || | ||||||||| | | ||||||||||||||| |||| |||  ||||||||||||| |||| ||    
T  5306035 ggcttgataagcttttttataagcttaagcctaacccatttaaattaacaagttttttaaaaagctcatgcttgacctttttattaaacgagctaggtcg 5306134  T
Q  216 agccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccctaa 281  Q
     | || ||||| |||||  || |  ||||||| ||| | ||||||||| |||||||||| ||||||    
T  5306135 ggtcgagctttcagtaggtcgggccataggcccctgacgagcggcctggcctattcccatccctaa 5306200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 19090301 - 19090440
Alignment:
Q  147 tagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggc 246  Q
    ||||||| ||||||||||   ||||||||||||||  ||| | ||| ||||| |||||||| || ||||||||||||||| |||||   | || ||||||    
T  19090301 tagcctatttaaattaatgaactttttaaaaagcttgagccttacctatttaataaacgagctacgccgagccgggctttaagtaggttgggtcataggc 19090400  T
Q  247 ctctggcaagcggcctgacctattcccacccctaagtaca 286  Q
    |||||   | ||||||||||||||||||||||||| ||||    
T  19090401 ctctgaggaacggcctgacctattcccacccctaaataca 19090440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 17913894 - 17913978
Alignment:
Q  147 tagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagta 231  Q
    ||||||| |||||||||||  ||||||||||||||  ||  | ||| ||||| |||| |||||||||||||||| ||||| ||||    
T  17913894 tagcctatttaaattaataaactttttaaaaagcttgagtcttacctatttaataaaggagttaggccgagccgagctttaagta 17913978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 30618156 - 30618282
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggca 254  Q
    ||||||||||| |||||||||||||||  ||| ||||| ||||| |||| ||| |||||| ||| | ||||| ||||| ||| |  ||||||| | | |     
T  30618156 ttaaattaataagctttttaaaaagcttgagcctaacctatttaataaatgagctaggcctagctgagctttaagtaggccgtgccataggccccggacg 30618255  T
Q  255 agcggcctgacctattcccacccctaa 281  Q
     |||| ||| |||||||||| ||||||    
T  30618256 ggcggtctggcctattcccatccctaa 30618282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 34583139 - 34582978
Alignment:
Q  120 tgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagcc 219  Q
    ||||| ||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  34583139 tgataggcttttttacaagcctaagcccggcctaattaaattaataggctttttaaaaagctcaagcttgactcattgattaaacgagttaggccgagcc 34583040  T
Q  220 gggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccctaa 281  Q
    | ||||||||||| |||||  ||||||  ||| |  |||||||| |||||||||||||||||    
T  34583039 gagcttttagtaggccgagccataggctcctgacgggcggcctggcctattcccacccctaa 34582978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 40897175 - 40896988
Alignment:
Q  93 ctcgtatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    ||||||||||||| |||||| |||| | |||| |||||||||||||||||||| | ||||||||||||||| | | ||||||||||||| ||| || |||    
T  40897175 ctcgtatacgggccggcctggtaggttcgataggcttttttataagcctaagtctggcctaattaaattaacaagatttttaaaaagcttaagtttgacc 40897076  T
Q  193 catttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||||||||||||  |||||||| ||| |||||||||||  ||||  ||||||| ||| | |||  |||||||||||||||||||||    
T  40897075 catttattaaacgaactaggccgaaccgagcttttagtaggtcgagccataggcccctgacgagcaacctgacctattcccaccccta 40896988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 16719794 - 16719670
Alignment:
Q  127 cttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttt 226  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| | ||||    
T  16719794 cttttttataagcctaagcccggcctaattaaattaataggctttttaaaaagctcaagcttgactcatttattaaacgagttaggctgagccagacttt 16719695  T
Q  227 tagtagaccgagttataggcctctg 251  Q
    |||||| |||||  |||||||||||    
T  16719694 tagtaggccgagccataggcctctg 16719670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 10542335 - 10542460
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggca 254  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||| ||| |||||  ||||||| |||       
T  10542335 ttaaattaataggctttttaaaaagctcaagcttgacccatttattaaacgagttaagccgagccgagtttttaataggccgagccataggcccctgatg 10542434  T
Q  255 agcggcctgacctattcccaccccta 280  Q
    ||||| ||| ||||||| || |||||    
T  10542435 agcggtctggcctattctcatcccta 10542460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 31224210 - 31224319
Alignment:
Q  128 ttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctttt 227  Q
    |||||||||||| ||||  | |||||||| ||||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||| || |||||    
T  31224210 ttttttataagcgtaagcctggcctaattgaattaatagacttttttaaaagttcaagtttaacccatttattaaacgagttaggccgagcaggactttt 31224309  T
Q  228 agtagaccga 237  Q
    | ||||||||    
T  31224310 aatagaccga 31224319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 5927145 - 5927285
Alignment:
Q  107 ggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacga 206  Q
    ||||| |||||  ||||| | ||||||||||||||| |||| ||||| |||||| |||||| ||||||||||||| ||| || ||| ||||||||||||     
T  5927145 ggccttataggactgataggattttttataagcctatgtatggcctatttaaatgaataggttttttaaaaagctaaagtttgacctatttattaaacgg 5927244  T
Q  207 gttaggccgagccgggcttttagtagaccgagttataggcc 247  Q
    ||||||  | | |||| |||||||||||||||| |||||||    
T  5927245 gttaggttgggtcgggtttttagtagaccgagtcataggcc 5927285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 12621811 - 12621941
Alignment:
Q  109 cctgataggcttgataagctttttt-ataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgag 207  Q
    ||||||||||||||||||||||||| |||||||||||      ||| || ||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  12621811 cctgataggcttgataagctttttttataagcctaagcccgatctatttgaattaataggctttttaaaaagctcaaacttgactcatttattaaacgag 12621910  T
Q  208 ttaggccgagccgggcttttagtagaccgag 238  Q
     |||||| | || | |||||||||| |||||    
T  12621911 ctaggccaaaccagacttttagtaggccgag 12621941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 28283634 - 28283739
Alignment:
Q  126 gcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctt 225  Q
    |||||| ||||||||| ||  ||||||| |||||| |||   ||||||||||| ||  ||| | ||| ||||| |||||||| |||||||||||||||||    
T  28283634 gcttttctataagccttagcctagcctatttaaataaatgaactttttaaaaaacttgagccttacctatttaataaacgagctaggccgagccgggctt 28283733  T
Q  226 ttagta 231  Q
    | ||||    
T  28283734 taagta 28283739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 29454739 - 29454658
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccg 236  Q
    ||||||||||  |||||||||||| || |||  |||||  |||| ||||||||||||| ||||||| ||||| |||||||||    
T  29454739 ttaaattaatgagctttttaaaaatcttaagtctaacctgtttaataaacgagttaggtcgagccgagctttaagtagaccg 29454658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 99 - 280
Target Start/End: Complemental strand, 40707898 - 40707716
Alignment:
Q  99 tacgggctggcctgataggcttgataagctttttt-ataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccattt 197  Q
    ||||||| | |||||||||||||||| |||||||| ||||||||||||    ||||| |||||| ||||| |||||||||||||||||||| || ||||     
T  40707898 tacgggccgacctgataggcttgataggctttttttataagcctaagtccgacctaaataaattgataggttttttaaaaagctcaagcttgactcattc 40707799  T
Q  198 attaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||||| ||||||||||||||||||||| ||||  |||||  ||||||| ||| |  |||||||| ||||||||||||||||    
T  40707798 attaaacaagttaggccgagccgggctttcagtaagccgagccataggcccctgacgggcggcctggcctattcccaccccta 40707716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 38669634 - 38669503
Alignment:
Q  150 cctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctc 249  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||  ||||||||||||||| || |   ||||||| |    
T  38669634 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttattaaacgagctaggccggaccgggcttttagtaggccaaaccataggcccc 38669535  T
Q  250 tggcaagcggcctgacctattcccacccctaa 281  Q
    || | ||||||||| ||||||||||| |||||    
T  38669534 tgacgagcggcctggcctattcccactcctaa 38669503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 3289544 - 3289679
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| ||||||||||| |||||| | ||||||||||||||||      |||||||||||||||||||||||||||||| | |||||| || ||||    
T  3289544 tatacgggccggcctgataggtttgatagggttttttataagcctaaacccgacctaattaaattaataggctttttaaaaagattaagcttgactcatt 3289643  T
Q  197 tattaaacgagttaggccgagccgggcttttagtag 232  Q
    ||||||||||| ||| ||| |||||| |||||||||    
T  3289644 tattaaacgagctagaccgtgccgggtttttagtag 3289679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 9857244 - 9857366
Alignment:
Q  97 tatacgggctggcctgataggcttgataagctttttt-ataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccat 195  Q
    |||||| || |||||||||||||||||| | |||||| ||||||||||     ||||||||||||||||||| |||||||||||||||||||| || |||    
T  9857244 tatacgagccggcctgataggcttgataggttttttttataagcctaaacccggcctaattaaattaatagg-tttttaaaaagctcaagcttgactcat 9857342  T
Q  196 ttattaaacgagttaggccgagcc 219  Q
    ||||||||||||||||||| ||||    
T  9857343 ttattaaacgagttaggcctagcc 9857366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 13258907 - 13258774
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| | |||||||||||||||| ||||||| |||||||||| |    |||||||||||||||||||||      |||| ||||||| || ||||    
T  13258907 tatacgggccgacctgataggcttgataggcttttt-ataagcctaactccgacctaattaaattaataggcttgagcctaagcccaagcttgactcatt 13258809  T
Q  197 tattaaacgagttaggccgagccgggcttttagta 231  Q
    |||||||||||||||||  ||||||||||||||||    
T  13258808 tattaaacgagttaggctaagccgggcttttagta 13258774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 51127104 - 51127226
Alignment:
Q  150 cctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctc 249  Q
    ||||||||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||| | | || || ||||||| |||||  |||| || |    
T  51127104 cctaattaaattaatagcctttttaaaaagcttaagcttgacacatttattaaacgagttaggccaaactggactattagtaggccgagccatagacccc 51127203  T
Q  250 tggcaagcggcctgacctattcc 272  Q
    || | || |||||| ||||||||    
T  51127204 tgacgagtggcctggcctattcc 51127226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 35362448 - 35362564
Alignment:
Q  111 tgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagtta 210  Q
    |||||||| ||||| || ||||||||||||||||  ||||  | ||||||||||||||||||| ||||||||| |  ||||| |||||||||| ||||||    
T  35362448 tgataggcctgataggcgtttttataagcctaagcctagctcatttaaattaataggcttttt-aaaagctcatgtctaacctatttattaaatgagtta 35362546  T
Q  211 ggccgagccgggctttta 228  Q
    ||| | ||||||||||||    
T  35362547 ggctgggccgggctttta 35362564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 8772545 - 8772601
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttag 211  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  8772545 ttaaattaataggctttttaaaaagctcaagcttgactcatttattaaacgagttag 8772601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 13642794 - 13642888
Alignment:
Q  110 ctgataggcttgataagctttttt-ataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaac 204  Q
    |||||||| |||||| |||||||| ||||||||||   ||||| | ||||||||||| ||||||| ||||||||| |||||||| |||||||||||    
T  13642794 ctgataggtttgataggctttttttataagcctaaacctagcc-atttaaattaataagctttttgaaaagctcatgcttaacctatttattaaac 13642888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 28093677 - 28093551
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggca 254  Q
    ||||||||||||| ||||||||||||||| | || | |  |||||||||||||||||| || |||| ||||| || ||  || |  ||||||| ||| |     
T  28093677 ttaaattaataggttttttaaaaagctcatgtttgaactttttattaaacgagttaggtcgggccgagctttcagcaggtcgggccataggcccctgacg 28093578  T
Q  255 agcggcctgacctattcccacccctaa 281  Q
    ||| | ||| |||||||||||||||||    
T  28093577 agcagtctgtcctattcccacccctaa 28093551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 31375136 - 31375011
Alignment:
Q  149 gcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcct 248  Q
    ||||| ||||| ||||  |||||||||||||||  ||| ||||| ||||| ||| |||| ||||||||||||  |||| ||||| ||| || |||||||     
T  31375136 gcctatttaaaataatgagctttttaaaaagcttgagcataacctatttaataaccgagctaggccgagccgaactttaagtaggccgggtcataggccc 31375037  T
Q  249 ctggcaagcggcctgacctattccca 274  Q
    ||| |  || ||||| ||||||||||    
T  31375036 ctgacgggcagcctggcctattccca 31375011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 13142857 - 13142963
Alignment:
Q  126 gcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctt 225  Q
    |||||| ||||||||| |   ||||||| ||||||||||  |||||||||||||||   || ||||| ||||| |||||||| |||| |||| || ||||    
T  13142857 gcttttctataagccttaacctagcctatttaaattaatgagctttttaaaaagcttgtgcctaacctatttaataaacgagctaggtcgagtcgagctt 13142956  T
Q  226 ttagtag 232  Q
    | |||||    
T  13142957 taagtag 13142963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 280
Target Start/End: Original strand, 16576580 - 16576762
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| | |||| ||||| ||||| | |||||||||||||||     | ||||||||||||||||||||||||| ||||||||||||| || ||||    
T  16576580 tatacgggccgacctggtaggcctgataggattttttataagcctaccccaa-cctaattaaattaataggctttttataaagctcaagcttgactcatt 16576678  T
Q  197 tattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||||||||||||||| |||| ||||||||||||| |||||  ||||||| ||| |  ||| |||| ||||||||||||||||    
T  16576679 tattaaacgagttaggctgagcggggcttttagtaggccgagccataggcccctgacgggcgacctggcctattcccaccccta 16576762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 29909416 - 29909264
Alignment:
Q  128 ttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctttt 227  Q
    |||||||||||||||||  ||||| | ||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||| | | |||||    
T  29909416 ttttttataagcctaagcctagcccatttaaattaataggatttttaaaaagctcatgcttgacctatttattaaacgagttaggccgagtcagactttt 29909317  T
Q  228 agtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||| |||  | |||| || ||| | ||||||||| ||||||| ||||||||    
T  29909316 agtaggccggatcatagacccctgacgagcggcctggcctattcacaccccta 29909264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 6636192 - 6636285
Alignment:
Q  120 tgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggc 213  Q
    ||||| |||||||||||||||||||  || || | ||||||||||||||||||||||||||||| |||| ||| |||||||||| |||| ||||    
T  6636192 tgataggcttttttataagcctaagcctaaccaatttaaattaataggctttttaaaaagctcatgcttgacctatttattaaatgagtaaggc 6636285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 29443052 - 29443113
Alignment:
Q  150 cctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttag 211  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  29443052 cctaattaaattaataggctttttaaaaagttcaaacttgacccatttattaaacgagttag 29443113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 6628400 - 6628511
Alignment:
Q  126 gcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctt 225  Q
    ||||||||||| |||||||  ||| | | ||||||||||||||||||||||||||||| | || ||| |||||||||| |||| ||| || |||| ||||    
T  6628400 gcttttttata-gcctaagcctagtcaatttaaattaataggctttttaaaaagctcatgtttgacctatttattaaatgagtaaggtcgggccgtgctt 6628498  T
Q  226 ttagtagaccgag 238  Q
    | ||||| |||||    
T  6628499 tcagtaggccgag 6628511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 18311287 - 18311156
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| || | |||| | |||||| ||||||||||||| ||||||    || |  ||||||||||  |||||||||||| |||||| | |  ||||    
T  18311287 tatacgggccggaccgatatgtttgataggcttttttataagtctaagt----ccgacctaaattaataaactttttaaaaagttcaagcatgagtcatt 18311192  T
Q  197 tattaaacgagttaggccgagccgggcttttagtag 232  Q
    ||||||||||||||||| ||| | | ||||||||||    
T  18311191 tattaaacgagttaggctgagacagacttttagtag 18311156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 3295187 - 3295244
Alignment:
Q  155 ttaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttagg 212  Q
    ||||||||||||| ||||||||||| | ||| || | |||||||||||||||| ||||    
T  3295187 ttaaattaataggatttttaaaaagtttaagtttgatccatttattaaacgagatagg 3295244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 116 - 280
Target Start/End: Complemental strand, 16166361 - 16166196
Alignment:
Q  116 ggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaa-gctcaagcttaacccatttattaaacgagttaggcc 214  Q
    ||||||||| |||||||||||||||||||     ||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| || ||||||    
T  16166361 ggcttgataggcttttttataagcctaagcccgacctaattaagttaataggctttttaaaaaagctcaagcttgactcatttattaaacaagctaggcc 16166262  T
Q  215 gagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    |||||| ||||||||||| |||||  ||||||| ||| |  |||||||| ||||||||||| ||||    
T  16166261 gagccgagcttttagtaggccgagccataggcccctgacgggcggcctggcctattcccacaccta 16166196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 110 - 280
Target Start/End: Complemental strand, 6138723 - 6138552
Alignment:
Q  110 ctgataggcttgataagctttttt-ataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagt 208  Q
    |||||||||||||||  ||||||| |||||||||||  ||||  |  ||||||||||| |||||||||||||||| | || ||| |||||||||||||||    
T  6138723 ctgataggcttgatatactttttttataagcctaagcctagctcatgtaaattaatagactttttaaaaagctcatgtttgacctatttattaaacgagt 6138624  T
Q  209 taggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    ||||||   ||| ||||||||||| |||  | ||||||| ||| | | ||||||||||||||||||||||||    
T  6138623 taggccagaccgagcttttagtaggccggatcataggcccctgacgaacggcctgacctattcccaccccta 6138552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 30591484 - 30591368
Alignment:
Q  97 tatacgggctggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatt 196  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||     |||| |||| |||||||||||||||||||||||||  || |||||||    
T  30591484 tatacgggccggcctgataggcttgataggtttttttataagcctaagcccgacctatttaatttaataggctttttaaaaagctcaaatttgacccatt 30591385  T
Q  197 tattaaacgagttaggc 213  Q
    ||||||||||| |||||    
T  30591384 tattaaacgagctaggc 30591368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 697842 - 697948
Alignment:
Q  110 ctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagtt 209  Q
    |||||||| |||||| |||||||||||||||||||| |  | |||||||||||||| | |||||||||||||||||||| || ||||||||||||||| |    
T  697842 ctgataggtttgataggcttttttataagcctaagtttgacataattaaattaataagttttttaaaaagctcaagcttgactcatttattaaacgagct 697941  T
Q  210 aggccga 216  Q
    || ||||    
T  697942 agaccga 697948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 15055909 - 15056017
Alignment:
Q  129 tttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctttta 228  Q
    |||||||||| |||||  ||||| | |||||||| ||| |||||||||||||||| |||| ||| |||||||||||||||||||||| ||||| |||| |    
T  15055909 tttttataagtctaagcttagcccatttaaattattagactttttaaaaagctcatgcttgacctatttattaaacgagttaggccgggccggactttca 15056008  T
Q  229 gtagaccga 237  Q
    |||| ||||    
T  15056009 gtaggccga 15056017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 22292925 - 22292823
Alignment:
Q  110 ctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagtt 209  Q
    |||||||| |||||| |||||||||||| |||| |  ||||| | ||||||||||| ||||||| ||||||||| |||| |||  |||||||||| ||||    
T  22292925 ctgataggtttgataggcttttttataaacctatgcctagcccatttaaattaataagctttttgaaaagctcatgcttgacctgtttattaaacaagtt 22292826  T
Q  210 agg 212  Q
    |||    
T  22292825 agg 22292823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 22298483 - 22298389
Alignment:
Q  110 ctgataggcttgataagctttttt-ataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaac 204  Q
    |||||||| |||||| |||||||| ||||||||||   ||||| | ||||||||||| ||||||| ||||||||| |||||||| |||||||||||    
T  22298483 ctgataggtttgataggctttttttataagcctaaacctagcc-atttaaattaataagctttttgaaaagctcatgcttaacctatttattaaac 22298389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 17196627 - 17196554
Alignment:
Q  106 tggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaag 179  Q
    ||||||||||||||| |||||||||||| ||||||| ||  ||||||| |||| | ||||| |||| |||||||    
T  17196627 tggcctgataggcttaataagcttttttgtaagccttagcctagcctatttaattaaatagactttataaaaag 17196554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 44028215 - 44028314
Alignment:
Q  109 cctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagt 208  Q
    |||||||||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  44028215 cctgataggcttgataagcttttttataagcctaagtccgacctaattaaataaataggctttttaaaaagctcaaacttgacccatttattaaacgagt 44028314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 280
Target Start/End: Original strand, 9798503 - 9798676
Alignment:
Q  107 ggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacga 206  Q
    |||| ||||||||||||  |||||||||||||||||||    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  9798503 ggccggataggcttgatgggcttttttataagcctaagcccggcctaattaaattaaaaggctttttaaaaagctcaagcttaaatcatttattaaacga 9798602  T
Q  207 gttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    | |||  ||| |||  ||||| |||| |||||| ||||||| |||     | ||||| ||||||||||||||||    
T  9798603 gctagatcgaaccgaactttttgtaggccgagtcataggcccctgatggacagcctggcctattcccaccccta 9798676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 281
Target Start/End: Complemental strand, 50385236 - 50385102
Alignment:
Q  147 tagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggc 246  Q
    ||||||| ||||||||||  |||||||||||| ||  ||  ||||| ||||| ||||||||||||| ||||||| ||||| |||||  || || ||||||    
T  50385236 tagcctatttaaattaatgagctttttaaaaaacttgagtctaacctatttaataaacgagttaggtcgagccgagctttaagtaggtcgggtcataggc 50385137  T
Q  247 ctctggcaagcggcctgacctattcccacccctaa 281  Q
    | ||| | ||||||||| |||||||||||||||||    
T  50385136 ccctgacgagcggcctggcctattcccacccctaa 50385102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 53200064 - 53199944
Alignment:
Q  160 ttaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcgg 259  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||| ||| |||||||||  |||||  |||||||  || |  ||||    
T  53200064 ttaataggctttttaaaaagctcaagcttgactcatttattaaacgagataggcagagtcggacttttagtaagccgagccataggcccttgacgggcgg 53199965  T
Q  260 cctgacctattcccaccccta 280  Q
    |||| || |||||||| ||||    
T  53199964 cctggccgattcccactccta 53199944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 278
Target Start/End: Complemental strand, 4957740 - 4957569
Alignment:
Q  107 ggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacga 206  Q
    |||||||||||| |  || |||||| ||||||||| ||  ||||||| |||||||||    |||||||||||||| |||| | ||| ||||| |||||||    
T  4957740 ggcctgataggcctagtaggcttttctataagccttagcctagcctatttaaattaacgaactttttaaaaagcttaagccttacctatttaataaacga 4957641  T
Q  207 gttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccacccc 278  Q
      |||||||||||||  ||||||||| ||| || |||| |  |||   |||||||| |||||||||||||||    
T  4957640 actaggccgagccggaattttagtaggccgggtcatagactactgatgagcggcctaacctattcccacccc 4957569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 43107881 - 43107993
Alignment:
Q  169 tttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggcttttagtagaccgagttataggcctctggcaagcggcctgaccta 268  Q
    |||||||||||||  |||| |||  ||||| |||||||||||||||||||||  |||| ||||| |||||| |||||||| ||    ||||| |||||||    
T  43107881 tttttaaaaagcttgagctcaacttatttaataaacgagttaggccgagccgatctttaagtaggccgagtcataggcctttgaggggcggcttgaccta 43107980  T
Q  269 ttcccacccctaa 281  Q
    |||||| ||||||    
T  43107981 ttcccaaccctaa 43107993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 54739275 - 54739189
Alignment:
Q  128 ttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggcc 214  Q
    |||||||||||| |||   ||||| | |||||| ||||| ||||||||||| |||| | || ||| |||||||||||||||||||||    
T  54739275 ttttttataagcataaacctagcccatttaaataaatagactttttaaaaaactcatgtttgacctatttattaaacgagttaggcc 54739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 29652923 - 29652861
Alignment:
Q  218 ccgggcttttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccccta 280  Q
    |||| |||||||||| |||||  ||||||| ||| | || |||||||||||||||||||||||    
T  29652923 ccggccttttagtaggccgagccataggcccctgacgagtggcctgacctattcccaccccta 29652861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 6130738 - 6130653
Alignment:
Q  107 ggcctgataggcttgataagcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacc 192  Q
    ||||||||||||||  ||  ||||| ||||||||| ||| || |||| ||||||||||   ||||||||||||||  |||||||||    
T  6130738 ggcctgataggcttagtagacttttctataagccttagtctaacctatttaaattaatgaactttttaaaaagcttgagcttaacc 6130653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 277
Target Start/End: Original strand, 35199 - 35345
Alignment:
Q  126 gcttttttataagcctaagtatagcctaattaaattaataggctttttaaaaagctcaagcttaacccatttattaaacgagttaggccgagccgggctt 225  Q
    |||||| ||||||| | ||  ||||||| ||||||||||  |||||||||||||||  ||| ||||| ||||| ||||| || |||     |||||||||    
T  35199 gcttttctataagcattagcctagcctatttaaattaatgagctttttaaaaagcttgagcctaacctatttaataaacaagctag-----gccgggctt 35293  T
Q  226 ttagtagaccgagttataggcctctggcaagcggcctgacctattcccaccc 277  Q
    | |||||   |||| ||||||| |||   ||||||||| |||||||||||||    
T  35294 taagtaggtagagtcataggcccctgatgagcggcctggcctattcccaccc 35345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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