View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14968_high_6 (Length: 337)
Name: NF14968_high_6
Description: NF14968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14968_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 8831179 - 8830848
Alignment:
| Q |
1 |
agttaggggtgtaagtggcccagataaatccattgtacccgacaaaccaaccc----------gtaaatcacccgttgtttattggttcgggtcaaaacc |
90 |
Q |
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| T |
8831179 |
agttaggggtgtaagtggcccggataaatccattgtacccgacaaaccaacccaacccaacccgtaaatcacccgttgtttattggttcgggtcaaaacc |
8831080 |
T |
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| Q |
91 |
agattgaaattgtcaagaaccaaacacaataggtacatgtgacagattttacttatgaacccacccacctgaggagattcgtttccttaaaaggtactgc |
190 |
Q |
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| T |
8831079 |
agattgaaattgtcaagaaccaaacacaataggtacatgtgacagattttacttatgaacccacccacctgaggagattcgtttcct-------tactgc |
8830987 |
T |
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| Q |
191 |
ctaatgtaagtaatatgcgtcttaacaaaaacaaaatcctcacacttcacaggcttctcctcctccttcttcgaaccacaatcatgtcatcccacacctt |
290 |
Q |
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| T |
8830986 |
ctaatgtaagtaatatgtgtcttaacaaaaacaaaaacctcacacttcgcaggcttctcctcctccttcttcgaaccacaatcatgtcatcccacacctt |
8830887 |
T |
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| Q |
291 |
ctccttcactttgtctatgccgtccactccttctgtgct |
329 |
Q |
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| T |
8830886 |
ctccttcactgtgtctatgccgtccactccttctatgct |
8830848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 43989682 - 43989602
Alignment:
| Q |
54 |
gtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgtcaagaaccaaacacaataggtacatgtgaca |
134 |
Q |
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| T |
43989682 |
gtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgaca |
43989602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 43985092 - 43985044
Alignment:
| Q |
249 |
cctcctccttcttcgaaccacaatcatgtcatcccacaccttctccttc |
297 |
Q |
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| T |
43985092 |
cctcctccttcttcgacccatgatcatgtcatcccacgccttctccttc |
43985044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 44003292 - 44003244
Alignment:
| Q |
2 |
gttaggggtgtaagtggcccagataaatccattgtacccgacaaaccaa |
50 |
Q |
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| T |
44003292 |
gttaggggtgtaagtggacaggataaatccattgaacccgacaaaccaa |
44003244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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