View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14968_low_3 (Length: 291)
Name: NF14968_low_3
Description: NF14968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14968_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 38888574 - 38888472
Alignment:
| Q |
46 |
caccaaacaataaaacactcaaacgagaaacaacactaatccctaaacaacgtaagggacaagatcactatcaattgagttcataattgaaagctttcac |
145 |
Q |
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| T |
38888574 |
caccaaacaataaaacactcaaacgagaaacaacactaatccctaaacaacgtaagggacaagatcactaccaattgagttcataattgaaagctttcac |
38888475 |
T |
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| Q |
146 |
cta |
148 |
Q |
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||| |
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| T |
38888474 |
cta |
38888472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 38887932 - 38887859
Alignment:
| Q |
195 |
cgaattaacaattgaattattatgtatcctcc--nnnnnnnnnttgaattattatgtataatatttttggcaaa |
266 |
Q |
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| T |
38887932 |
cgaattaacaattgaattattatgtatcctccaaaaaaaaaatttgaattattatgtataatatttttggcaaa |
38887859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 38888453 - 38888421
Alignment:
| Q |
146 |
ctagaataagacaacatcacactcctcaagtca |
178 |
Q |
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| T |
38888453 |
ctagaataagacaacatcacactcctcaagtca |
38888421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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