View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14968_low_4 (Length: 283)
Name: NF14968_low_4
Description: NF14968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14968_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 46958479 - 46958230
Alignment:
| Q |
14 |
aagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaac |
113 |
Q |
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| T |
46958479 |
aagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaac |
46958380 |
T |
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| Q |
114 |
aaatgatcaaaaaacaagttgtaagttagctataaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggtt |
213 |
Q |
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| T |
46958379 |
aaatgatcaaaaaacaagttgtaagttagctataaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggtt |
46958280 |
T |
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| Q |
214 |
agtgcagaaatgactgtggacgaattgcttcagaataatctgggatgggc |
263 |
Q |
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| T |
46958279 |
agtgcagaaatgactgtggacgaattgcttcagaataatctgggatgggc |
46958230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 263
Target Start/End: Complemental strand, 46955593 - 46955377
Alignment:
| Q |
47 |
aaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaacaaatgatcaaaaaacaagttgtaagttagctat |
146 |
Q |
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| T |
46955593 |
aaatatcttccttccaatctttatcggcatttgtttggagaagtgtgacttgtgcacgaagactaaaacatgatcaaaaaaccagttgcaagttagccat |
46955494 |
T |
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| Q |
147 |
aaataatcgactaagattggaaccacctttgccgcaggagtactttggaaacacagttgatgtggttagtgcagaaatgactgtggacgaattgcttcag |
246 |
Q |
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| T |
46955493 |
aaacaatagatcaagaatcaaaccacctctcccgcaagagtactttggaaactcagttgatgtggtgagtacagaaacgactgtaggcgaattgcttgag |
46955394 |
T |
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| Q |
247 |
aataatctgggatgggc |
263 |
Q |
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| T |
46955393 |
aatgatttaggatgggc |
46955377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 46951298 - 46951138
Alignment:
| Q |
14 |
aagcaaaggcgaataaggagtttaacacaacaaaaatatcttcgttccaggctttatcagcacatgtttggagatgtgtcacacgtgcacgcggactaac |
113 |
Q |
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|||| ||||| |||| ||||| ||| |||| ||||| ||||| ||||| ||||||||||||||||||||||| || | || ||||| |||| ||||| |
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| T |
46951298 |
aagctaaggccaatatggagtctaatacaaacaaaatctcttcattccaatctttatcagcacatgtttggagaggtataactcgtgctcgcgacctaac |
46951199 |
T |
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| Q |
114 |
aaatgatcaaaaaacaagttgtaagttagctataaataatcgactaagattggaaccacct |
174 |
Q |
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| T |
46951198 |
gaatgatcaagtaacaacttgtatgttagccgtaaataatcgaccgagaatgaaaccacct |
46951138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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