View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14969_high_14 (Length: 389)
Name: NF14969_high_14
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 3433107 - 3433258
Alignment:
| Q |
13 |
aatatatcaatgattattaagtatttaaccgcaaaactcacacacactaaataagaaatggaaaattgtgggctcaaacttacacctcactatgttcaat |
112 |
Q |
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| T |
3433107 |
aatatatcaatgattattaagtgtttagccgcaaaactcacgcacactaaataagaaatggaaaattgtgggctcaaacttacacctcactatgggcaat |
3433206 |
T |
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| Q |
113 |
gtttttgcaacttattaccttcaaaggagtagttcttatgaaactatatatt |
164 |
Q |
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| T |
3433207 |
gtttttgcaacttattaccttcaaaggagtagttcttatgaaactatatatt |
3433258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 202 - 371
Target Start/End: Original strand, 3433296 - 3433461
Alignment:
| Q |
202 |
cctcttcttagttacgaggttataccaaatattcttaccgcattttaaccnnnnnnnnnnnnnnnntatgttcttaccgcataggcagcagctaataaat |
301 |
Q |
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| T |
3433296 |
cctcttcttaattacgaggttataccaaatgttcttaccgcattgtaaccaaaaaaaatata----tatgttcttaccgcataggcagcagctaataaat |
3433391 |
T |
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| Q |
302 |
tcatatcccaaccaattgtccacacagaatctttgttttccataatcaaagtggtagcaaaagctagaat |
371 |
Q |
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| T |
3433392 |
tcatatcccaaccaattgtccacacagaatctttgttttccataatcaaagtggtagcaaaagctagaat |
3433461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 272 - 371
Target Start/End: Original strand, 3374115 - 3374214
Alignment:
| Q |
272 |
ttcttaccgcataggcagcagctaataaattcatatcccaaccaattgtccacacagaatctttgttttccataatcaaagtggtagcaaaagctagaat |
371 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||| |||||| |
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| T |
3374115 |
ttcttacggcataggcagcagcaaataaattcatatcccaaccaattgtccacacagaagcattgtgttccataatcaaagtggtcacaaaagatagaat |
3374214 |
T |
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