View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14969_high_16 (Length: 372)
Name: NF14969_high_16
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14969_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 36 - 362
Target Start/End: Complemental strand, 39400521 - 39400195
Alignment:
| Q |
36 |
tagcagcgtaacaaactcaactttctttcttctctagacacttcttcctcctccatttagtctcttctatctatctcccataacaagaagataatatcat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39400521 |
tagcagcgtaacaaactcaactttctttcttctctagacacttcttcctcctccatttactctcttctatctatctcccataacaagaagataatatcat |
39400422 |
T |
|
| Q |
136 |
caaccactttttgtattgtaagcttctaaacttcattctcattttttatacattacttcatgattcagttttcatagttcaatcatatattttgtttctc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39400421 |
caaccactttttgtattgtaagcttctaaacttcattctcattttttatacattacttcatgattcagttttcatagttcaatcatatattttgtttctc |
39400322 |
T |
|
| Q |
236 |
aaactgtaatctattcattacttcatgatttattagttagttagagctaataaatgtgtgtattattgttataatgttgaaacattgatttacccctgtt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39400321 |
aaactgtaatctattcattacttcatgatttattagttagttagagctaataaatgtgtgtattattgttataatgttgaaacattgatttacccctgtt |
39400222 |
T |
|
| Q |
336 |
tataataaatgctatgtattcttcatc |
362 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39400221 |
tataataaatgctatgtattcttcatc |
39400195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University