View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14969_high_35 (Length: 270)

Name: NF14969_high_35
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14969_high_35
NF14969_high_35
[»] chr2 (6 HSPs)
chr2 (1-168)||(34314693-34314860)
chr2 (168-257)||(36250567-36250656)
chr2 (168-257)||(17164591-17164680)
chr2 (169-257)||(19877471-19877559)
chr2 (169-257)||(32212942-32213030)
chr2 (169-257)||(24168190-24168278)
[»] scaffold0234 (1 HSPs)
scaffold0234 (168-260)||(6932-7024)
[»] chr3 (11 HSPs)
chr3 (168-254)||(8485964-8486050)
chr3 (169-257)||(24700097-24700185)
chr3 (184-257)||(54737168-54737241)
chr3 (167-257)||(47425136-47425226)
chr3 (171-251)||(27237960-27238040)
chr3 (169-235)||(32834615-32834681)
chr3 (207-254)||(34629392-34629439)
chr3 (168-213)||(25574666-25574711)
chr3 (186-235)||(32835865-32835914)
chr3 (166-208)||(53659000-53659042)
chr3 (169-221)||(46225068-46225120)
[»] chr5 (2 HSPs)
chr5 (169-257)||(17042198-17042286)
chr5 (165-257)||(7933402-7933494)
[»] chr4 (5 HSPs)
chr4 (168-257)||(5155501-5155590)
chr4 (166-257)||(51746188-51746279)
chr4 (168-257)||(17722292-17722381)
chr4 (169-257)||(2594448-2594536)
chr4 (169-257)||(17641348-17641435)
[»] chr8 (3 HSPs)
chr8 (169-257)||(19177953-19178040)
chr8 (168-257)||(28239294-28239383)
chr8 (170-247)||(12814975-12815053)
[»] chr6 (5 HSPs)
chr6 (172-257)||(16548288-16548373)
chr6 (170-257)||(16730426-16730513)
chr6 (167-257)||(21224550-21224639)
chr6 (172-257)||(14809558-14809642)
chr6 (169-257)||(30685720-30685808)
[»] chr7 (5 HSPs)
chr7 (167-257)||(8981545-8981635)
chr7 (169-257)||(31715297-31715385)
chr7 (169-251)||(7705934-7706016)
chr7 (167-257)||(26263056-26263146)
chr7 (167-257)||(32913688-32913778)
[»] chr1 (2 HSPs)
chr1 (168-257)||(21117481-21117570)
chr1 (168-258)||(21112739-21112828)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 34314693 - 34314860
Alignment:
Q  1 cagacatatgtacacataaaatgatatgtattttaaaaactggatacattaaatagacaacttaaaaacacatgtgcatatcctagctaaaaattggtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34314693 cagacatatgtacacataaaatgatatgtattttaaaaactggatacattaaatagacaacttaaaaacacatgtgcatatcctagctaaaaattagtcc 34314792  T
Q  101 aatttaagaaggatacctagtnnnnnnnntgagaaaaggattatatttggagatgaaaaggatattat 168  Q
    ||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||    
T  34314793 aatttaagaaggacacctagtaaaaaaaatgagaaaaggattatatttggagatgaaaaggatattat 34314860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 36250656 - 36250567
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36250656 tcactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 36250567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 17164591 - 17164680
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  17164591 tcactactacataaatgacatttcacatcggttgaaatcgacatttcacatcgggtggcaaccgatgtaactaaaggtgaggttgtatgt 17164680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 19877559 - 19877471
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  19877559 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccagccgatataactaaggatgaggttgtatgt 19877471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 32212942 - 32213030
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||| ||||||||||| || ||| ||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  32212942 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaactaaaggtgaggttgtatgt 32213030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 24168278 - 24168190
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||| ||||||| ||||||||||| || |||||| || ||||||||||||| ||| | |||||||| || ||||| |||||||||    
T  24168278 cactactatagaaatgacatttcacatcagtggaaatcaacttttcacatcgggtcccaccagatgtaacgaaaggtgatgttgtatgt 24168190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 7024 - 6932
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgtgat 260  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7024 tcactactacagaaatgacatttcacatcgattgaaattgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgtgat 6932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 8485964 - 8486050
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgta 254  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8485964 tcactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgta 8486050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 24700097 - 24700185
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  24700097 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcggtttccaaccgatgtaactaaaggtgaggttgtatgt 24700185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 54737168 - 54737241
Alignment:
Q  184 ggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54737168 ggcattttacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 54737241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 47425226 - 47425136
Alignment:
Q  167 atcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||||| ||||||||||| || |||||| || ||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  47425226 atcactactacagaaatgacatttcacatcagtggaaatcaacttttcacatcgggtcccagccgatgtgactaaaggtgaggttgtatgt 47425136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 27238040 - 27237960
Alignment:
Q  171 ctactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggtt 251  Q
    |||||||||||||| ||| | |||||||||||||||||| ||| ||||| |||  ||||||||||||||||||||||||||    
T  27238040 ctactacagaaatgacatcttacatcggttgaaatcgacttttaacatcaggtggcaaccgatgtaactaagggtgaggtt 27237960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 32834615 - 32834681
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgt 235  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||| || ||| |||||||    
T  32834615 cactactacagaaatgacatttcacatcggtcaaaatcgacttttcacatcgagtcccagccgatgt 32834681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 34629439 - 34629392
Alignment:
Q  207 gacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgta 254  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  34629439 gacatttcacattgggtatcaaccgatgtaactaaaggtgaggttgta 34629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 25574711 - 25574666
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacattt 213  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||    
T  25574711 tcactactacagaaatgacatttcacatcagtggaaatcgacattt 25574666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 32835865 - 32835914
Alignment:
Q  186 catttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgt 235  Q
    |||||||||||||| ||||||||| ||||||||| ||| |||||||||||    
T  32835865 catttcacatcggtcgaaatcgacttttcacatcaggtcccaaccgatgt 32835914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 53659000 - 53659042
Alignment:
Q  166 tatcactactacagaaatggcatttcacatcggttgaaatcga 208  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||    
T  53659000 tatcactactacataaatgacatttcacatcggtggaaatcga 53659042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 46225068 - 46225120
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgg 221  Q
    |||||||||| ||||| ||||||| |||| | ||||| |||||||||||||||    
T  46225068 cactactacataaatgacatttcatatcgatggaaattgacatttcacatcgg 46225120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 17042198 - 17042286
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||    
T  17042198 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtgccaaccgatgtaactaagggcgaggttatatgt 17042286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 7933402 - 7933494
Alignment:
Q  165 ttatcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| |||||||||||||| | ||||||||| ||||| | ||| |||||||||    
T  7933402 ttattactactacagaaatgacatttcacatcggttggaatcgatatttcacatcgggtcctaaccgatgtcactaaagatgatgttgtatgt 7933494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 5155501 - 5155590
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  5155501 tcactactacagaaatgacatttcacatcagtggaaatcgacatttcacatcgggtcccaaccgatgtaactaaaggtgaggttgtatgt 5155590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 51746279 - 51746188
Alignment:
Q  166 tatcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||||||||||| |||||||||||||| |||| |||| ||||||||||||| || |||||||||||||| |||||||||||||||    
T  51746279 tatcactactacagaaatgacatttcacatcggtggaaaacgacttttcacatcgggtccctaccgatgtaactaaaggtgaggttgtatgt 51746188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 17722292 - 17722381
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||| |||||||||||| |||| ||||| |||||||||    
T  17722292 tcactactacagaaatgacatttcacatcggttgaaatcaacttttaacatcgggtgccaaccgatgtacctaaaggtgatgttgtatgt 17722381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 2594448 - 2594536
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||| ||||||||||| || ||| ||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  2594448 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaactaaaggtgaggttgtatgt 2594536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 17641348 - 17641435
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||| ||||| ||| |||||||||||| ||| ||||||||||||||||| | ||||||||| ||||| |||| ||||||||||    
T  17641348 cactactacataaatgacatctcacatcggttggaattgacatttcacatcgggtcctaaccgatgtcactaaaggtg-ggttgtatgt 17641435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 19177953 - 19178040
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  19177953 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatc-ggtaccaaccgatgtaattaaaggtgaggttgtatgt 19178040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 28239294 - 28239383
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  28239294 tcactactacataaatgacatttcacatcagtggaaattgacatttcacatcgggtcccaaccgatgtcactaaaggtgatgttgtatgt 28239383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 12814975 - 12815053
Alignment:
Q  170 actactacagaaatggcatttcacatcggttgaaatcgacattt-cacatcgggtaccaaccgatgtaactaagggtga 247  Q
    ||||||| |||||||  ||||||||||  ||||||||||| ||| ||||||||||  || ||||||||||||| |||||    
T  12814975 actactatagaaatgagatttcacatcacttgaaatcgactttttcacatcgggtgacacccgatgtaactaaaggtga 12815053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 16548288 - 16548373
Alignment:
Q  172 tactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  16548288 tactacagaaatgacatttcacattagttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagactgaggttgtatgt 16548373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 16730513 - 16730426
Alignment:
Q  170 actactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||||||||||| ||||| ||||| || ||||||||| |||||||| |||| ||| ||||||||||||| |||||||||||||||    
T  16730513 actactacagaaatgacatttaacatcagtggaaatcgacttttcacattgggtcccagccgatgtaactaaaggtgaggttgtatgt 16730426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 21224550 - 21224639
Alignment:
Q  167 atcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||||| ||||| ||||| || ||||||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  21224550 atcactactacagaaatgacatttaacatcagtggaaatcgacttttcacatcgggtcccacccgatgt-actaaaggtgaggttgtatgt 21224639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 14809642 - 14809558
Alignment:
Q  172 tactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||||| ||||| ||||| |||||||||||||| ||| ||| ||||  |||| |||||||||| || ||||||||||||||||||    
T  14809642 tactacataaatgacattttacatcggttgaaattgactttt-acataaggtagcaaccgatgtcaccaagggtgaggttgtatgt 14809558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 30685808 - 30685720
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    ||||| |||| ||||  ||||| |||||||||  ||| ||| |||||||| |||||||| ||||||||||||| ||||| |||||||||    
T  30685808 cactattacaaaaataacattttacatcggttataattgacttttcacattgggtaccatccgatgtaactaaaggtgatgttgtatgt 30685720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 8981545 - 8981635
Alignment:
Q  167 atcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||| ||||| |||||| |||| ||||| |||| ||||    
T  8981545 atcactactacagaaatgacattccacatcggttggaatcgacttttcacatcgggtcccaacggatgtagctaaaggtgaagttgaatgt 8981635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 31715385 - 31715297
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||| ||||| ||||||||||| ||  || ||||| ||||||||||| | ||||||||||||||||| |||||||||||||||    
T  31715385 cactactacaaaaatgacatttcacatcagtgaaattcgacttttcacatcggatcccaaccgatgtaactaaaggtgaggttgtatgt 31715297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 7705934 - 7706016
Alignment:
Q  169 cactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggtt 251  Q
    |||||||||||||||  ||||||||||| || ||||| ||||||||||||||||| ||| ||||||| ||||| |||||||||    
T  7705934 cactactacagaaatcacatttcacatcagtggaaattgacatttcacatcgggtcccagccgatgtgactaaaggtgaggtt 7706016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 26263056 - 26263146
Alignment:
Q  167 atcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||| |||||  |||||||||| || ||||||||| |||||||| |||| ||| ||||||||||||| ||||| |||||||||    
T  26263056 atcactactacataaatgaaatttcacatcagtggaaatcgacttttcacattgggtcccacccgatgtaactaaaggtgatgttgtatgt 26263146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 32913688 - 32913778
Alignment:
Q  167 atcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||||| ||||||||||  || ||| ||||| ||||| ||||| | ||| ||||||||||||| ||||| |||||||||    
T  32913688 atcactactacagaaatgacatttcacattagtggaattcgacttttcaaatcggatcccacccgatgtaactaaaggtgatgttgtatgt 32913778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 21117481 - 21117570
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgt 257  Q
    |||||||||||||||||  |||| ||||| || |||||| || ||||||||||||| ||| ||||||| ||||| ||||| |||||||||    
T  21117481 tcactactacagaaatgatatttaacatcagtggaaatcaacttttcacatcgggtcccacccgatgtcactaaaggtgatgttgtatgt 21117570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 21112739 - 21112828
Alignment:
Q  168 tcactactacagaaatggcatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtgaggttgtatgtg 258  Q
    ||||||||||||||||| ||||| ||||| || |||||| || ||||||||| ||| ||| ||||||| ||||| ||||| ||||||||||    
T  21112739 tcactactacagaaatgacatttaacatcagtggaaatcaacttttcacatc-ggtcccacccgatgtcactaaaggtgatgttgtatgtg 21112828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University