View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14969_high_37 (Length: 260)

Name: NF14969_high_37
Description: NF14969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14969_high_37
NF14969_high_37
[»] chr2 (3 HSPs)
chr2 (1-237)||(34314399-34314633)
chr2 (79-125)||(7328940-7328986)
chr2 (82-151)||(9253204-9253275)
[»] chr8 (1 HSPs)
chr8 (62-125)||(34474711-34474773)
[»] chr1 (3 HSPs)
chr1 (72-151)||(28552127-28552208)
chr1 (71-125)||(17282053-17282107)
chr1 (72-151)||(33459120-33459201)
[»] chr7 (2 HSPs)
chr7 (72-125)||(41714370-41714423)
chr7 (72-125)||(44533675-44533728)
[»] chr5 (2 HSPs)
chr5 (82-125)||(26349236-26349279)
chr5 (81-125)||(4914949-4914993)
[»] chr6 (2 HSPs)
chr6 (71-125)||(344490-344544)
chr6 (81-125)||(8394654-8394698)
[»] chr4 (1 HSPs)
chr4 (97-125)||(30534633-30534661)
[»] chr3 (1 HSPs)
chr3 (73-125)||(29019286-29019338)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34314633 - 34314399
Alignment:
Q  1 ctcgtcgtcggttaatttaatcttagataacgattccgttctttatcnnnnnnnacatcacttttatccttttttgatccgtttgcatatagattatcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||  ||||||||| |||||||||||||||    
T  34314633 ctcgtcgtcggttaatttaatcttagataacgattccgttctttatctttttttacgtcacttttatcctttt--gatccgtttacatatagattatcaa 34314536  T
Q  101 gcatcaaatctaaaatttatatgaacatggatcaaggaccatatatttgaattttgaaaatccatatcaaattgattcaaatgatgttaaaaagaataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34314535 gcatcaaatctaaaatttatatgaacatggatcaaggaccatatatttgaattttgaaaatccatatcaaattgattcaaatgatgttaaaaagaataaa 34314436  T
Q  201 cgatgaaaatcgttacctaaaattaagttaaaggacc 237  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34314435 cgatgaaaatccttacctaaaattaagttaaaggacc 34314399  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 7328986 - 7328940
Alignment:
Q  79 ccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    |||||||||||| ||||||||||||||||||| |||| | |||||||    
T  7328986 ccgtttgcatatggattatcaagcatcaaatcaaaaactcatatgaa 7328940  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 9253204 - 9253275
Alignment:
Q  82 tttgcatatagattatcaagcatcaaatctaaaatttatat--gaacatggatcaaggaccatatatttgaa 151  Q
    |||||||||  ||| ||||||||||||||||| ||||||||   ||||| ||| || |||||||||||||||    
T  9253204 tttgcatatgaattttcaagcatcaaatctaagatttatatcaaaacatagatgaaagaccatatatttgaa 9253275  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 34474711 - 34474773
Alignment:
Q  62 ttttatccttttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    ||||||||||||| |||| |||||||||| |||| |||| ||| ||||||||||||||||||||    
T  34474711 ttttatccttttt-gatctgtttgcatatcgattttcaatcattaaatctaaaatttatatgaa 34474773  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 28552208 - 28552127
Alignment:
Q  72 ttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatg--aacatggatcaaggaccatatatttgaa 151  Q
    |||||||  ||||||||||||||| ||||||| ||||||||||||| |||||  ||||||  | |||||||||||| |||||    
T  28552208 ttttgattggtttgcatatagattttcaagcagcaaatctaaaattcatatgaaaacatgattgaaggaccatatacttgaa 28552127  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 17282053 - 17282107
Alignment:
Q  71 tttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    |||||||||||| |||||||  ||| | ||||||||||||||||||| |||||||    
T  17282053 tttttgatccgtctgcatatgaatttttaagcatcaaatctaaaattcatatgaa 17282107  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 33459120 - 33459201
Alignment:
Q  72 ttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatg--aacatggatcaaggaccatatatttgaa 151  Q
    ||||| |||||||| ||||  ||| |||| ||||||||||||||||||||||  |||||  || ||| ||||||||||||||    
T  33459120 ttttggtccgtttgaatatgaattttcaaacatcaaatctaaaatttatatgaaaacatcaatgaagaaccatatatttgaa 33459201  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 41714423 - 41714370
Alignment:
Q  72 ttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    ||||||||| ||||||||| |||| ||||| || ||||||||||||||||||||    
T  41714423 ttttgatccatttgcatatggattttcaagtataaaatctaaaatttatatgaa 41714370  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 44533728 - 44533675
Alignment:
Q  72 ttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    ||||| ||||||||||||| |||| ||||||||||||| ||||||| |||||||    
T  44533728 ttttggtccgtttgcatatggattttcaagcatcaaatttaaaattcatatgaa 44533675  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 26349236 - 26349279
Alignment:
Q  82 tttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    |||||||||||||| |||||| |||||||||||||| |||||||    
T  26349236 tttgcatatagattttcaagcttcaaatctaaaattcatatgaa 26349279  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 4914993 - 4914949
Alignment:
Q  81 gtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    ||||||||||| ||| |||| |||||||||||||||| |||||||    
T  4914993 gtttgcatataaattttcaaacatcaaatctaaaattcatatgaa 4914949  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 344544 - 344490
Alignment:
Q  71 tttttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    ||||||||| |||||||||| |||| |||| ||||||||||||||  ||||||||    
T  344544 tttttgatctgtttgcatatggattttcaaccatcaaatctaaaacatatatgaa 344490  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 8394698 - 8394654
Alignment:
Q  81 gtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    |||||||||| |||| |||| |||||||||||||||| |||||||    
T  8394698 gtttgcatatggattttcaaacatcaaatctaaaattcatatgaa 8394654  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 30534633 - 30534661
Alignment:
Q  97 tcaagcatcaaatctaaaatttatatgaa 125  Q
    |||||||||||||||||||||||||||||    
T  30534633 tcaagcatcaaatctaaaatttatatgaa 30534661  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 29019338 - 29019286
Alignment:
Q  73 tttgatccgtttgcatatagattatcaagcatcaaatctaaaatttatatgaa 125  Q
    |||| |||||||||||||  ||| ||||||||||||| ||||||| |||||||    
T  29019338 tttggtccgtttgcatatgaattttcaagcatcaaatttaaaattaatatgaa 29019286  T

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